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Jinjun Kan, Ph.D.

584 584 Stroud Water Research Center
Jinjun Kan, Ph.D.

Senior Research Scientist

  • Principal investigator, Microbiology Group.
  • Adjunct professor, Department of Biology, University of Pennsylvania.
  • Adjunct professor, Department of Plant and Soil Sciences, University of Delaware.

Contact

jkan@stroudcenter.org
tel. 610-910-0047
970 Spencer Road, Avondale, PA 19311

https://orcid.org/0000-0001-5331-380X

Interests and Expertise

Jinjun Kan’s interests include environmental microbiology and molecular microbial ecology of aquatic ecosystems, particularly freshwater and estuaries, with a focus on algal, bacterial, archaeal, and viral population dynamics, and interactions with local environments, including trophic interactions, nutrient cycling, and biogeochemistry.

Google Scholar | ResearchGate | Download CV

Education

  • Ph.D., environmental molecular microbiology/biotechnology, University of Maryland, College Park, Maryland.
  • M.S., ecology, First Institute of Oceanography, State Oceanic Administration, Qingdao, China.
  • B.S., ecology and environmental sciences, Ocean University of China, Qingdao, China.

Professional Experience

  • Senior research scientist, Stroud Water Research Center, 2024–present.
  • Associate research scientist, Stroud Water Research Center, 2017–2023.
  • Assistant research scientist, Stroud Water Research Center, 2010–2017.
  • Postdoctoral fellow, University of Southern California, Los Angeles, California, 2006–2010.
  • Research assistant, University of Maryland Biotechnology Institute, College Park, Maryland, 2001–2006.
  • Research assistant, Hong Kong University of Science and Technology, 1999–2001.

Publications

Phytoplankton diversity, spatial patterns, and photosynthetic characteristics under environmental gradients and anthropogenic influence in the Pearl River Estuary

Xia, J., H. Hu, X. Gao, J. Kan, Y. Gao, and J. Li. 2024. Biology 13(7), 550.

Deep metagenomic sequencing unveils novel SAR202 lineages and their vertical adaptation in the ocean

He, C., D. Fucich, A. Sosa, H. Wang, J. Kan, J. Liu, Y. Xu, N. Jiao, M. Gonsior, and F. Chen. 2024. Communications Biology 7, 853.

Porewater microbiomes in buried wetland soils: Synergic effects of water chemistry and redox gradients associated with hydrological processes

Kan, J., O. Lazareva, D. Oviedo-Vargas, S.M. McAllister, and C.S. Chan. 2024. Freshwater Biology, early online access.

Planktonic eukaryotes in the Chesapeake Bay: Contrasting responses of abundant and rare taxa to estuarine gradients

Hualong, W., F. Liu, M. Wang, Y. Bettarel, Y. Eissler, F. Chen, and J. Kan. 2024. Microbiology Spectrum, early online access.

Agricultural soil microbiomes differentiate in soil profiles with fertility source, tillage, and cover crops

Bier, R.L., M. Daniels, D. Oviedo-Vargas, M. Peipoch, J.R. Price, E. Omondi, A. Smith, and J. Kan. 2024. Agriculture, Ecosystems & Environment, early online access.

See all publications by Stroud Center authors

Stroud Center Collaborations Amplify Impact on Fresh Water

Scientists, educators, and watershed restoration professionals are working together to create long-lasting and positive impacts on waterways.

Ask a Scientist: Jinjun Kan

For our first installment of Ask a Scientist, we check in with Jinjun Kan, Ph.D., associate research scientist and principal investigator of the Microbiology Group at Stroud Water Research Center.

Sediment Sleuthing: Microbe DNA May Be Key to Restoring an Estuary Near You

Stroud Center science teams are collecting river DNA samples to understand where sediment pollution comes from and the best ways to fight it.

A Small Farm Offers Big Opportunities for Measuring Watershed Restoration Success

Stream restorations rarely get monitored rigorously enough to determine if the “patient” has fully recovered.

Stream Reach: Building Communities from White Clay Creek to the Yangtze Basin

To truly make a difference requires, not only understanding freshwater systems, but working with all kinds of communities to protect them.

Don’t Stop Me Now! Studying the Effects of Milldam Removal

Stroud Water Research Center scientists are investigating how milldam removal might affect groundwater and surface water quality.
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