Menu

Subscribe to E-News

Publications

Scientific rigor is critical to building trust in the stewardship measures we recommend. Peer-reviewed publication of our freshwater research, environmental education, and watershed restoration activities is a fundamental communication tool.

Scroll to view all publications in reverse chronological order or filter by author. 

Stroud Water Research Center: The First Fifty Years

Anniversary book celebrating 50 years of the Stroud Center's history. Published by Stroud Water Research Center.

Riparian and geomorphic controls on thermal habitat dynamics of pools in a temperate headwater stream

Ouellet, V., E.E. Gibson, M.D. Daniels, and N.A. Watson. 2017. Ecohydrology (online early view).

Arsenic (V) bioconcentration kinetics in freshwater macroinvertebrates and periphyton is influenced by pH

Lopez, A.R., D.H. Funk, and D.B. Buchwalter. 2017. Environmental Pollution 224:82–88.

Physiological responses to short-term thermal stress in mayfly (Neocloeon triangulifer) larvae in relation to upper thermal limits

Kim, K.S., H. Chou, D.H. Funk, J.K. Jackson, B.W. Sweeney, and D.B. Buchwalter. 2017. Journal of Experimental Biology 220:2598–2605.

2016 Stroud Center Annual Report

Through a scientist’s lens: training citizens in freshwater stewardship.

Archaea dominate the ammonia-oxidizing community in deep-sea sediments of the Eastern Indian Ocean – from the Equator to the Bay of Bengal

Wang, J., J. Kan, X. Zhang, Z. Xia, X. Zhang, G. Qian, Y. Miao, X. Leng, and J. Sun. 2017. Frontiers in Microbiology 8:415.

Influence of experimental extreme water pulses on greenhouse gas emissions from soils

Petrakis, S., A. Seyfferth, J. Kan, S. Inamdar, and R. Vargas. 2017. Biogeochemistry 133(2):147–164.

Assessing chromophoric dissolved organic matter (CDOM) distribution, stocks, and fluxes in Apalachicola Bay using combined field, VIIRS ocean color, and model observations

Joshi, I.D., E.J. D’Sa , C.L. Osburn, T.S. Bianchi, D.S. Ko, D. Oviedo-Vargas, A.R. Arellano, and N.D. Ward. 2017. Remote Sensing of Environment 191:359–372.

Colonization and diversification of aquatic insects on three Macronesian archipelagos using 59 nuclear loci derived from a draft genome

Rutschmann, S., H. Detering, S. Simon, D.H. Funk, J-L. Gattolliat, S.J. Hughes, P.M. Raposeiro, R. DeSalle, M. Sartori, M.T. Monaghan. 2017. Molecular Phylogenetics and Evolution 107:27–38.

Conservation Reserve Program mitigates grassland loss in the lesser prairie-chicken range of Kansas

Spencer, D., D. Haukos, C. Hage, M. Daniels, and D. Goodin. 2017. Global Ecology and Conservation 9:21–38.

Dissimilatory microbial iron reduction release DOC (dissolved organic carbon) from carbon-ferrihydrite association

Pan, W., J. Kan, S. Inamdar, C. Chen, and D. Sparks. 2016. Soil Biology and Biochemistry 103:232–240.

Children’s use of iPads in outdoor environmental education programs

Kacoroski, J., K. Liddicoat, and S. Kerlin. 2016. Applied Environmental Education & Communication, 15(4):301–311.

Variation of organic matter quantity and quality in streams at Critical Zone Observatory watersheds

Miller, M.P., E.W. Boyer, D.M. McKnight, M.G. Brown, R.S. Gabor, C.T. Hunsaker, L. Iavorivska, S. Inamdar, D.W. Johnson, L.A. Kaplan, H. Lin, W.H. McDowell, and J.N. Perdrial. 2016. Water Resources Research 52(10):8202–8216.

Chamber measurements of high CO2 emissions from a rainforest stream receiving old C-rich regional groundwater

Oviedo-Vargas D., D. Dierick, D.P. Genereux, and S.F. Oberbauer. 2016. Biogeochemistry 130(1–2):69–83.

Beryllium-7 wet deposition variation with storm height, synoptic classification, and tree canopy state in the mid-Atlantic USA

Karwan, D.L., C.M. Siegert, D.F. Levia, J. Pizzuto, J. Marquard, R. Aalto, and A.K. Aufdenkampe. 2016. Hydrological Processes 30(1):75–89.

Dissolved organic matter in stream ecosystems: forms, functions, and fluxes of watershed tea

Kaplan, L.A., and R. Cory. 2016. Pages 241–320 in J.B. Jones and E.H. Stanley (editors). Stream Ecosystems in a Changing Environment. Academic Press, Cambridge, Massachusetts.

Nutrient spiraling and transport in streams: the importance of in-stream biological processes to nutrient dynamics in streams

Webster, J.R., J.D. Newbold, and L. Lin. 2016. Pages 179–237 in J.B. Jones and E.H. Stanley, (editors). Streams in a changing environment. Academic Press, Cambridge, Massachusetts. 

A snapshot on spatial and vertical distribution of bacterial communities in the Eastern Indian Ocean

Wang, J., L. Borecki, X. Zhang, D. Wang, J. Kan, and J. Sun. 2016. Acta Oceanologica Sinica 35:85–93.

Mating behavior of Phyllopalpus pulchellus Uhler (Orthoptera: Gryllidae: Trigonidiinae)

D.H. Funk. 2016. Journal of Orthoptera Research 25:7–13.

Bioaccumulation dynamics of arsenate at the base of aquatic food webs

Lopez, A.R., D.R. Hesterberg, D.H. Funk, and D.B. Buchwalter. 2016. Environmental Science & Technology 50(12):6556–6564.

Coal ash constituents at the base of aquatic food webs: processes affecting bioaccumulation and trophic transfer of arsenic

Lopez, A.R., D.R. Hesterberg, D.H. Funk, and D.B. Buchwalter. 2016. Water Resources Research Institute of The University of North Carolina Report No. 465.

River conservation, restoration, and preservation: rewarding private behavior to enhance the commons

Sweeney, B.W., and J.G. Blaine. 2016. Freshwater Science 35:755–763.

Observations Data Model 2: a community information model for spatially discrete Earth observations

Horsburgh, J.S., A.K. Aufdenkampe, E. Mayorga, K.A. Lehnert, L. Hsu, L. Song, A.S. Jones, S.G. Damiano, D.G. Tarboton, D. Valentine, I. Zaslavsky, and T. Whitenack. 2016. Environmental Modelling & Software 79:55–74.

Seasonal dynamics of the soil microbial community structure within the proximal area of tree boles: possible influence of stemflow

Rosier, C.L., D.F. Levia, J.T. Van Stan, A.K. Aufdenkampe, and J. Kan. 2016. European Journal of Soil Biology 73:108–118.

Geochemistry and mixing drive the spatial distribution of free-living archaea and bacteria in Yellowstone Lake

Kan, J., S. Clingenpeel, C.L. Dow, T.R. McDermott, R.E. Macur, W.P. Inskeep, and K.H. Nealson. 2016. Frontiers in Microbiology 7(210):1–13.

Resilience of aquatic net-spinning caddisfly silk structures to common global stressors

Albertson, L.K., and M.D. Daniels. 2016. Freshwater Biology 61(5):670–679.

Bison and cattle grazing management, bare ground coverage, and links to suspended sediment concentrations in grassland streams

Grudzinski, B.P., M.D. Daniels, K. Anibas, and D. Spencer. 2016. Journal of the American Water Resources Association 52(1):16–30.

Baseflow physical characteristics differ at multiple spatial scales in stream networks across diverse biomes

Rüegg, J., W.K. Dodds, M.D. Daniels, et al. 2015. Landscape Ecology  31(1):119–136.

Spider fauna of three geographically isolated wetland types in southwestern Georgia

W. Tietjen, S. Becker, T.K. Muenz, S.W. Golladay. 2016. Southeastern Naturalist.

The effect of regional groundwater on carbon dioxide and methane emissions from a lowland rainforest stream in Costa Rica

Oviedo-Vargas D., D.P. Genereux, D. Dierick, and S.F. Oberbauer. 2015. Journal of Geophysical Research: Biogeosciences 120(12):2579–2595.

Carbon pools in stream-riparian corridors: legacy of disturbance along mountain streams of south-eastern Wyoming

Ruffing, C.M., K.A. Dwire, and M.D. Daniels. 2015. Earth Surfaces Processes and Landforms 41(2):208–223.

Part 2: Sensitivity comparisons of the mayfly Centroptilum triangulifer to Ceriodaphnia dubia and Daphnia magna using standard reference toxicants; NaCl, KCl and CuSO4

Struewing, K.A., J.M. Lazorchak, P.C. Weaver, B.R. Johnson, D.H. Funk, and D.B. Buchwalter. 2015. Chemosphere 139:597–603.

Part 1: Laboratory culture of Centroptilum triangulifer (Ephemeroptera: Baetidae) using a defined diet of three diatoms

Weaver, P.C., J.M. Lazorchak, K.A. Struewing, S.J. DeCelles, D.H. Funk, D.B. Buchwalter, and B.R. Johnson. 2015. Chemosphere 139:589–596.

Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function

Inskeep, W.P., Z.J. Jay, R.E. Macur, S. Clingenpeel, A. Tenney, D. Lovalvo, J.P. Beam, M.A. Kozubal, W.C. Shanks, L.A. Morgan, J. Kan, Y. Gorby, S. Yooseph, and K. Nealson. 2015. Frontiers in Microbiology 6:1044.

First record of a large-scale bloom-causing species Nannochloropsis granulata (Monodopsidaceae, Eustigmatophyceae) in China Sea Waters

Zhang, X., J. Kan, J. Wang, H. Gu, J. Hu, Y. Zhao, and J. Sun. 2015. Ecotoxicology 24:1430–1441.

The geochemical transformation of soils by agriculture and its dependence on soil erosion: an application of the geochemical mass balance approach

Yoo, K., B. Fisher, J. Ji, A. Aufdenkampe, and J. Klaminder. 2015. Science of the Total Environment 521:326–335.

Opinion: endogenizing culture in sustainability science research and policy

Caldasa, M.M., M.R. Sanderson, M. Mather, M.D. Daniels, J.S. Bergtold, J. Aistrup, J.L. Heier Stamm, D. Haukosc, K. Douglas-Mankin, A.Y. Sheshukov, and D.Lopez-Carr. Proceedings of the National Academy of Sciences of the United States of America 112(27):8157–8159.

Consumption of terrestrial dissolved organic carbon by stream microorganisms

Wiegner, T.N., L.A. Kaplan, S.E. Ziegler, R.H. Findlay. 2015. Aquatic Microbial Ecology 75:225–237.

The Role of Critical Zone Observatories in Critical Zone Science

White, T., S. Brantley, S. Banwart, J. Chorover, W. Dietrich, L. Derry, K. Lohse, S. Anderson, A. Aufdenkampe, R. Bales, P. Kumar, D. Richter, and B. McDowell. 2015. Pages 15–17 in J.R. Giardino and C. Houser (editors). Developments in earth surface processes, volume 19: principles and dynamics of the Critical Zone. Elsevier, Cambridge, Massachusetts.

Longitudinal shifts in dissolved organic matter chemogeography and chemodiversity within headwater streams: a river continuum reprise

Mosher, J.J., L.A. Kaplan, D.C. Podgorski, A.M. McKenna, and A.G. Marshall. 2015. Biogeochemistry 124(1–3):371–385.

Fundamental spatial and temporal disconnections in the hydrology of an intermittent prairie headwater network

Costigan, K.H., M.D. Daniels, W.K. Dodds. 2015. Journal of Hydrology 522:305–316.

The role of dissolved organic nitrogen in a nitrate-rich agricultural stream

Oviedo-Vargas D., and T.V. Royer. 2015. Journal of Environmental Quality 44(2):668–675.

Green schools as learning laboratories? Teachers’ perceptions of their first year in a new green middle school

Kerlin, S., R. Santos, and W. Bennett. 2015. Journal of Sustainability Education 8(1).

Forest canopy structural controls over throughfall affect soil microbial community structure in an epiphyte-laden maritime oak stand

Rosier, C., J. van Stan, L. Moore, J. Schrom, T. Wu, J. Reichard, and J. Kan. 2015. Ecohydrology 8:1459–1470.

Designing resilient energy education programs for a sustainable future

Lane, J., A. Baker, R. Franzen, S. Kerlin, and S. Schuller. 2015. Journal of Sustainability Education, 8.

Dynamic hydrologic and biogeochemical processes drive microbially enhanced iron and sulfur cycling within the intertidal mixing zone of a beach aquifer

McAllister, S.M., J.M. Barnett, J.W. Heiss, A.J. Findlay, D.J. MacDonald, C.L. Dow, G.W. Luther III, H.A. Michael, and C.S.Chan. 2015. Limnology and Oceanography 60:329–345.

Elevated major ion concentrations inhibit larval mayfly growth and development

Johnson, B.R., P.C. Weaver, C.T. Nietch, J.M. Lazorchak, K.A. Struewing, and D.H. Funk. 2015. Environmental Toxicology and Chemistry 34(1):167–172.

Impact of exotic earthworms on organic carbon sorption on mineral surfaces and soil carbon inventories in a northern hardwood forest

Lyttle, A., K. Yoo, C. Hale, A.K. Aufdenkampe, S.D. Sebestyen, K. Resner, and A. Blum. 2015. Ecosystems 18(1):16–29.

Invasive earthworms deplete key soil inorganic nutrients (Ca, Mg, K, and P) in a northern hardwood forest

Resner, K., K. Yoo, C. Hale, A.K. Aufdenkampe, S.D. Sebestyen, A. Lyttle, and A. Blum. 2015. Ecosystems 18(1):89–102.

Evaluation of passive samplers for the collection of dissolved organic matter in streams

Warner D., D. Oviedo-Vargas, and T.V. Royer. 2015. Environmental Monitoring and Assessment 187(1):1–9.

The Stream Biome Gradient Concept: controlling factors of streams across broad biogeographic scales

Walter, K.D., K. Gido, M.R.While, M.D. Daniels, and B.P. Grudzinski. 2015. Freshwater Science 34(1):1–19.

Spatial distribution and ecosystem effects of a nuisance, bloom-forming diatom (Didymosphenia geminata) in Catskill Mountain streams, New York

Richardson, D.C., I.A. Oleksy, T.J. Hoellein, D.B. Arscott, C.A. Gibson, and S.M. Root. 2014. Aquatic Sciences 76:553.

Rapid response of a sand-dominated river to installation and removal of a temporary run-of-the-river dam

Costigan, K.H., C.M. Ruffing, M.D. Daniels, and J.S. Perkin. 2014. River Research and Applications 32(1):110–124.

Alabama Water Watch and Georgia Adopt-A-Stream partner with the U.S. Forest Service to monitor and protect watersheds in the Escambia Experimental Forest

Dyson, D.S., T.K. Muenz, and E. Reutebuch. 2014. Alabama’s Treasured Forest Magazine, Alabama Forestry Commission.

Improved performance of the PacBio SMRT technology for 16S rDNA sequencing

Mosher, J.J., B. Bowman, E.L. Bernberg, O. Shevchenko, J. Kan, J. Korlach, and L.A. Kaplan. 2014. Journal of Microbiological Methods 104:59–60.

Science, not politics, should guide Clean Water Act clarification

Sweeney, B.W. 2014. Op-Ed in The News Journal, Wilmington, Delaware.

Fragmentation and drying ratchet down Great Plains stream fish diversity

Perkin, J.S., K.B. Gido, K.H. Costigan, M.D. Daniels, and E.R. Johnson. 2014. Aquatic Conservation: Marine and Freshwater Ecosystems 25(5):639–655.

A stressful shortness of breath: molting disrupts breathing in the mayfly Cloeon dipterum

Camp, A.A., D.H. Funk, and D.B. Buchwalter. 2014. Freshwater Science 33(3):695–699.

Coupled geochemical and biogeochemical characterization of dissolved organic matter from a headwater stream

Sleighter, R.L., R.M. Cory, L.A. Kaplan, H.A.N. Abdulla, and P.G. Hatcher. 2014. Journal of Geophysical Research: Biogeochemistry 119(8):1520–1537.

Influence of riparian and watershed alterations on sandbars in a Great Plains river

Fischer, J., C. Paukert, and M.D. Daniels. 2014. River Research and Applications 31(9):1140–1150.

The delivery of dissolved organic carbon from a forested hillslope to a headwater stream in southeastern Pennsylvania, USA

Mei, Y., G.M. Hornberger, L.A. Kaplan, J.D. Newbold, and A.K. Aufdenkampe. 2014. Water Resources Research 50(7):5774–5796.

Systematics and acoustics of North American Anaxipha (Gryllidae: Trigonidiinae)

Walker, T.J., and D.H. Funk. 2014. Journal of Orthoptera Research 23:1–38.

Hydrologic dynamics and geochemical responses within a floodplain aquifer and hyporheic zone during Hurricane Sandy

Sawyer, A.H., L.A. Kaplan, O. Lazareva, and H.A. Michael. 2014. Water Resources Journal 50(6):4877–4892.

Streamside forest buffer width needed to protect stream water quality, habitat, and organisms: a literature review

Sweeney, B.W., and J.D. Newbold. 2014. Journal of the American Water Resources Association 50:560–584.

Community-developed geoscience cyberinfrastructure

Richard, S. M., G. Pearthree, A.K. Aufdenkampe, J. Cutcher-Gershenfeld, M. Daniels, B. Gomez, D. Kinkade, and G. Percivall. 2014 . Eos, Transactions American Geophysical Union 95(20):165–166.

No evidence of aquatic priming effects in hyporheic zone microcosms

Bengtsson, M.M., K. Wagner, N.R. Burns, E.R. Herberg, W. Wanek, L.A. Kaplan, and T.J. Battin. 2014. Scientific Reports 4, Article number: 5187. 

Linking seasonal inorganic nitrogen shift to the dynamics of microbial communities in the Chesapeake Bay

Hong, Y., X. Xu, J. Kan, and F. Chen. 2014. Applied Microbiology and Biotechnology 98:3219–3229.

Longitudinal variability in hydraulic geometry and substrate characteristics of a Great Plains sand-bed river

Costigan, K.H., M.D. Daniels, J.S. Perkin, and K.B. Gido. 2014. Geomorphology 210:48–58.

Does DNA barcoding improve performance of traditional stream bioassessment metrics?

Stein, E.D., B.P. White, R.D. Mazor, J.K. Jackson, J.M. Battle, P.E. Miller, E.M. Pilgrim, and B.W. Sweeney. 2014. Freshwater Science 33(1):302–311.

A variable source area for groundwater evapotranspiration: impacts on modeling stream flow

Tsang, Y.P., G. Hornberger, L.A. Kaplan, J.D. Newbold, and A.K. Aufdenkampe. 2014. Hydrological Processes 28(4):2439–2450.

Soil organic matter stability in organo-mineral complexes as a function of increasing C loading

Feng, W., A.F. Plante, A.K. Aufdenkampe, and J. Six. 2014. Soil Biology and Biochemistry 69:398–405.

Classification of the alterations of beaver dams to headwater streams in northeastern Connecticut, USA

Burchsted, D., and M.D. Daniels. 2014. Geomorphology 205:36–50.

Cryptic biodiversity in streams: a comparison of macroinvertebrate communities based on morphological and DNA barcode identifications

Jackson, J.K., J.M. Battle, B.P. White, E.M. Pilgrim, E.D. Stein, P.E. Miller, and B.W. Sweeney. 2014. Freshwater Science 33(1):312–324.

From local to extreme environments (FLEXE): connecting students and scientists in online forums

Carlsen, W.S., E. Goehring, and S.C. Kerlin. 2014. Pages 81–89 in V.C.H. Tong (editor). Geoscience Research and Outreach: Schools and Public Engagement, volume 21 in Innovations in Science Education and Technology series. Springer Netherlands, Dordrecht.

Response of benthic macroinvertebrates to gradients in hydrological connectivity: a comparison of temperate, subtropical, Mediterranean and semiarid river floodplains

Gallardo, B., S. Dolédec, A. Paillex, D.B. Arscott, F. Sheldon, F. Zilli, S. Mérigoux, E. Castella, and F.A. Comín. 2014. Freshwater Biology 59:630–648.

Open data: crediting a culture of cooperation

Bolukbasi, B., N. Berente, J. Cutcher-Gershenfeld, L. Dechurch, C. Flint, M. Haberman, A.K. Aufdenkampe, J. Bass, J. Crowell, M.D. Daniels, S. Diggs, C. Duffy, Y. Gil, B. Gomez, S. Graves, R. Hazen, L. Hsu, D. Kinkade, K. Lehnert, C. Marone, D. Middleton, A. Noren, G. Pearthree, M. Ramamurthy, E. Robinson, G. Percivall, S. Richard, C. Suarez, and D. Walker. 2013. Science 342(6162):1041–1042.

Efficacy of a third generation high-throughput sequencing platform for analyses of 16S rRNA genes from environmental samples

Mosher, J.J., E.L. Bernberg, O. Shevchenko, J. Kan, and L.A. Kaplan. 2013. Journal of Microbiological Methods 95:175–181.

Solute-specific scaling of inorganic nitrogen and phosphorus uptake in streams

Hall, R.O., Jr., M.A. Baker, E.J. Rosi-Marshall, J.L. Tank, and J.D. Newbold. 2013. Biogeosciences 10:7323–7331.

Electricity generation from microbial fuel cell using microorganisms as catalyst in cathode

Jang, J.K, J. Kan, O. Bretschger, Y.A. Gorby, L. Hsu, B.H. Kim, and K.H. Nealson. 2013. Journal of Microbiology and Biotechnology 23(12):1765–1773.

Sustaining Earth’s critical zone: basic science and interdisciplinary solutions for global challenges

Banwart, S.A., J. Chorover, J. Gaillardet, D. Sparks, T. White, S. Anderson, A. Aufdenkampe, et al. 2013. Report of an international workshop on Critical Zone Observatory science, 9-11 November 2011. The University of Sheffield, United Kingdom.

Yellowstone Lake Nanoarchaeota

Clingenpeel, S., J. Kan, R.E. Macur, T. Woyke, D. Lovalvo, J. Varley, W.P. Inskeep, K.H. Nealson, and T. McDermott. 2013. Frontiers in Microbiology 4:274.

Blazing and grazing: influences of fire and bison on tallgrass prairie stream water quality

Larson, D.M., B.P. Grudzinski, W.K. Dodds, M. Daniels, A. Skibbe, and A. Joern. 2013. Freshwater Science 32(3):779–791.

Biological lability of dissolved organic carbon in stream water and contributing terrestrial sources

McLaughlin, C., and L. A. Kaplan. 2013. Freshwater Science 32(4):1219–1230.

Global learning communities: a comparison of online domestic and international science class partnerships

Kerlin, S., W. Carlsen, G. Kelly, and E. Goehring. Online 2012, print 2013. Journal of Science Education and Technology 22(4):475–487.

Apatite and chitin amendments promote microbial activity and augment metal removal in marine sediments

Kan, J., A. Obraztsova, Y. Wang, J. Leather, K.G. Scheckel, K.H. Nealson, and Y.M. Arias-Thode. 2013. Open Journal of Metal, Heavy Metal Special Issue 3:51–61.

Bioconcentration and biotransformation of selenite versus selenate exposed periphyton and subsequent toxicity to the mayfly Centroptilum triangulifer

Conley, J.M., D.H. Funk, D.H. Hesterberg, L.-C. Hsu, J. Kan, Y.-T. Liu, and D.B. Buchwalter. 2013. Environmental Science & Technology 47:7965–7973.

Ecosystem metabolism and nutrient uptake in Peruvian headwater streams

Bott, T.L., and J.D. Newbold. 2013. International Review of Hydrobiology 98:117–131.

Dissolved organic carbon manipulation reveals coupled cycling of carbon, nitrogen and phosphorus in a nitrogen-rich stream

Oviedo-Vargas D., T.V. Royer, and L.T. Johnson. 2013. Limnology and Oceanography 58(4):1196–1206.

Measuring heterotrophic respiration rates of suspended particulate organic carbon from stream ecosystems

Richardson, D.C., J.D. Newbold, A.K. Aufdenkampe, P.G. Taylor, L.A. Kaplan. 2013. Limnology and Oceanography Methods 11:247–261.

Present research frontiers in geomorphology

Plater, A.J., M.D. Daniels, and T. Oguchi. 2013. Pages 349-376 in A.R. Orme and D. Sack (editors). Treatise in Geomorphology, Volume 1, Academic Press, Cambridge, Massachusetts.

Adaptation of soil microbes during establishment of microbial fuel cell consortium fed with lactate

Futamata, H., O. Bretschger, A. Cheung, J. Kan, R. Owen, and K.H. Nealson. 2013. Journal of Bioscience and Bioengineering 115(1):58–63.

Late Miocene through early Pleistocene nutrient utilization and export production in the Antarctic Zone of the Southern Ocean

Billups, K., A.K. Aufdenkampe, and R. Hays. 2013. Global and Planetary Change 100:353–361.

The scientific names of two common Florida crickets (Orthoptera, Gryllidae)

Walker, T. J., and D. H. Funk. 2012. Florida Entomologist 95:936–938.

Abandoned coal mine drainage and its remediation: impacts on stream ecosystem structure and function

Bott, T.L., J.K. Jackson, M. McTammany, J.D. Newbold, S. Rier, B.W. Sweeney, and J. Battle. 2012. Ecological Applications 22:2144–2163.

Slimy leaves for clean streams: the leaf pack experiment

Medved, C., B.W. Sweeney, J.G. Blaine. 2012. Pages 56–57 in Interpretive Sourcebook: 2012 NAI National Workshop, Hampton, Virginia.

Dam design can impede adaptive management of environmental flows: a case study from the Opuha Dam, New Zealand

Lessard, J., D.M. Hicks, T.H. Snelder, D.B. Arscott, S.T. Larned, D. Booker, and A.M. Suren. 2013. Environmental Management 51(2):459–473.

Dietary (periphyton) and aqueous Zn bioaccumulation dynamics in the mayfly Centroptilum triangulifer

Mei, Y., G.M. Hornberger, L.A. Kaplan, J.D. Newbold, and A.K. Aufdenkampe. 2012. Water Resources Research 48(9):W09514.

The significance of perceptions and feedbacks for effectively managing wood in rivers

Chin, A., L.R. Laurencio, M.D. Daniels, E. Wohl, M.A. Urban, K.L. Boyer, A. Butt, H. Piegay, and K.J. Gregory. 2012. River Research and Applications 30(1):98–111.

Fish community response to habitat alteration: impacts of sand dredging in the Kansas River

Fischer, J., C. Paukert, and M.D. Daniels. 2012. Transactions of the American Fisheries Society 141(6):1532–1544.

Estimation of dissolved organic carbon contribution from hillslope soils to a headwater stream

Mei, Y., G.M. Hornberger, L.A. Kaplan, J.D. Newbold, and A.K. Aufdenkampe. 2012. Water Resources Research 48(9):W09514.

Biological lability of streamwater fluorescent dissolved organic matter

Cory, R.M., and L.A. Kaplan. 2012. Limnology and Oceanography 57(5):1347–1360.

Taxonomic certification versus the scientific method: a rebuttal of Rogers (2012)

Stribling, J., B.W. Sweeney, J. Morse, G. Corkum, G. Lester, S. Miller, R. Mitchell, B. Poulton, S. Strachan, and M. Wetzel. 2012. Zootaxa 3359: 65–68.

Electricity generation from a floating marine microbial fuel cell

Huang, Y., Z. He, J. Kan, A.K. Manohar, K.H. Nealson, and F. Mansfeld. 2012. Bioresource Technology 114:308–313.

Damming the prairie: human alteration of Great Plains river regimes

Costigan, K.H., and M.D. Daniels. 2012. Journal of Hydrology 444–445:90–99.

A DNA barcode library for North American Ephemeroptera: Progress and prospects

Webb, J.M., L.M. Jacobus, D.H. Funk, X. Zhou, B. Kondratieff, C.J. Geraci, R.E. DeWalt, D.J. Baird, B. Richard, I. Phillips, and P.D.N. Hebert. 2012. Plos One 7(5):e38063.

Turbulent particle transport in streams: can exponential settling be reconciled with fluid mechanics?

McNair, J.N., and J.D. Newbold. 2012. Journal of Theoretical Biology 300:62–80.

An initial investigation into the organic matter biogeochemistry of the Congo River

Spencer, R.G.M., P.J. Hernes, A.K. Aufdenkampe, A. Baker, P. Gulliver, A. Stubbins, G.R. Aiken, R.Y. Dyda, K.D. Butler, V.L. Mwamba, A.M. Mangangu, J.N. Wabakanghanzi, and J. Six. 2012. Geochimica et Cosmochimica Acta 84:614–627.

Scaling the gas transfer velocity and hydraulic geometry in streams and small rivers

Raymond, P.A., C.J. Zappa, D. Butman, T.L. Bott, C. Potter, P. Mulholland, A.E. Laursen, W.H. McDowell, and D. Newbold. 2012. Limnology and Oceanography: Fluids and Environments 2:41–53.

Factors controlling water-column respiration in rivers of the central and southwestern Amazon Basin

Ellis, E.E.E., J.E. Richey, A.K. Aufdenkampe, A.V. Krusche, P.D. Quay, C. Salimon, and H.B. da Cunha. 2012. Limnology and Oceanography 57(2):527–540.

Interannual dynamics of viriobenthos abundance and morphological diversity in Chesapeake Bay sediments

Helton, R.R., K. Wang, J. Kan, D.H. Powell, and K.E. Wommack. 2012. FEMS Microbiology Ecology 79:474–486.

Gryllus mandevillus (Orthoptera: Gryllidae) is a valid field cricket species

Weissman, D.B., D.H. Funk, and T.J. Walker. 2012. Zootaxa 3202:65–68.

Sustained losses of bioavailable nitrogen from montane tropical forests

Brookshire, E.N.J., L.O. Hedin, J.D. Newbold, D.M. Sigman, and J.K. Jackson. 2012. Nature Geoscience 5:123–126.

Professional development strategies that promote science inquiry teaching and learning

Kerlin, S. 2012. Kentucky Journal of Excellence in College Teaching 10:74–87.

Food rationing affects dietary selenium bioaccumulation and life cycle performance in the mayfly Centroptilum triangulifer

Conley, J.M., D.H. Funk, N.J. Cariello, and D.B. Buchwalter. 2011. Ecotoxicology 20:1840–1851.

Ecotoxicological response of marine organisms to inorganic and organic sediment amendments in laboratory exposure

Rosen, G., J. Leather, J. Kan, and Y.M. Arias-Thode. 2011. Ecotoxicology and Environmental Safety 74:1921–1930.

Marine bacterial community response to inorganic and organic amendments in marine sediments

Kan, J., Y. Wang, A. Obraztsova, G. Rosen, J. Leather, K. Scheckel, K.H. Nealson, and Y.M. Arias-Thode. 2011. Ecotoxicology and Environmental Safety 74:1931–1941.

Recent perspectives on temporary river ecology

Datry, T., D. Arscott, and S. Sabater. 2011. Aquatic Sciences–Research Across Boundaries 73(4):453–457.

The initial design of data sharing infrastructure for the Critical Zone Observatory

Zaslavsky, I., T. Whitenack, M. Williams, D. Tarboton, K. Schreuders, and A.K. Aufdenkampe. 2011. Pages 145–150 in M. B. Jones and C. Gries (editors). Proceedings of the Environmental Information Management Conference 2011. University of California, Santa Barbara, California.

A rapid fingerprinting approach to distinguish between closely related strains of Shewanella

Kan, J., B. Flood, J.P. McCrow, J.S. Kim, L. Tan, and K.H. Nealson. 2011. Journal of  Microbiological Methods 86:62–68.

Diverse bacterial groups are associated with corrosive lesions at a Granite Mountain Record Vault (GMRV)

Kan, J., P. Chellamuthu, A. Obraztsova, J.E. Moore, and K.H. Nealson. 2011. Journal of Applied Microbiology 111:329–337.

Elemental and mineralogical changes in soils due to bioturbation along an earthworm invasion chronosequence in Northern Minnesota

Resner, K., K. Yoo, C. Hale, A.K. Aufdenkampe, A. Blum, and S. Sebestyen. 2011. Applied Geochemistry 26:S127–S131.

Carbon–mineral interactions along an earthworm invasion gradient at a Sugar Maple Forest in Northern Minnesota

Lyttle, A., K. Yoo, C. Hale, A.K. Aufdenkampe, and S. Sebestyen. 2011. Applied Geochemistry 26:S85–S88.

Characterization and source determination of stream suspended particulate material in White Clay Creek, USA

D.L. Karwan, R. Aalto, A.K. Aufdenkampe, J.D. Newbold, and J.E. Pizzuto. 2011. Applied Geochemistry 26:S354–S356.

Synchronicity between population structure and proteome profiles: a metaproteomic analysis of Chesapeake Bay bacterial communities

Kan, J., T.E. Hanson, and F. Chen. 2011. Pages 637–644 in Frans J. de Bruijn (editor). Handbook of Molecular Microbial Ecology I; Metagenomics and Complementary Approaches. Wiley-Blackwell, Hoboken, New Jersey.

Optimizing the indirect extraction of prokaryotic DNA from soils

Williamson, K.E., J. Kan, S.W. Polson, and S.J. Williamson. 2011. Soil Biology and Biochemistry 43:736–748.

Yellowstone Lake: high energy geochemistry and rich bacterial diversity

Clingenpeel, S., R.E. Macur, J. Kan, W. P. Inskeep, D. Lavalvo, J. Varley, E. Mathur, K. Nealson, Y. Goby, T.L. Fracois, and T.R. McDermott. 2011. Environmental Microbiology 13:2172–2185.

Archaea in Yellowstone Lake

Kan, J., S. Clingenpeel, R.E. Macur, W.P. Inskeep, D. Lavalvo, J. Varley, Y. Gory, T.R. McDermott, and K.H. Nealson. 2011. ISME Journal 5:1784–1795.

Phytoplankton abundance and contributions to suspended particulate matter in the Ohio, Upper Mississippi, and Missouri Rivers

Bukaveckas, P.A., A.K. MacDonald, A. Aufdenkampe, J.H. Chick, J.E. Havel, R. Schultz, T. Angradi, D. Bolgrien, T. Jicha, and D. Taylor. 2011. Aquatic Sciences 73(3):419–436.

Eating local: influences of habitat on the diet of little brown bats (Myotis lucifugus)

Clare, E.L., R. Brittany, R. Barber, B.W. Sweeney, P.D.N. Hebert, and M.B. Fenton. 2011. Molecular Ecology 20(8):1772–1780.

Rates of soil mixing and associated carbon fluxes in a forest vs. tilled agricultural field: implications for modeling the soil carbon cycle

Yoo, K., J. Ji, A. Aufdenkampe, and J. Klaminder. 2011. Journal of Geophysical Research: Biogeosciences 116:2156–2202.

Summer-winter transitions in Antarctic ponds II: biological responses

Hawes, I., K. Safi, J. Webster-Brown, B. Sorrell, and D.B. Arscott. 2011. Summer-winter transitions in Antarctic ponds II: Biological responses. Antarctic Science 23(3):243–254.

Summer-winter transitions in Antarctic ponds I: the physical environment

Hawes, I., K. Safi, B. Sorrell, J. Webster-Brown, and D.B. Arscott. 2011. Antarctic Science 23(3):235–242.

Improving biogeochemical knowledge through technological innovation

Melack, J., A.C. Finzi, D. Siegel, S. MacIntyre, C. Nelson, A.K. Aufdenkampe, and M. Pace. 2011. Frontiers in Ecology and the Environment 9(1):37–43.

Riverine coupling of biogeochemical cycles between land, oceans, and atmosphere

Aufdenkampe, A.K., E. Mayorga, P.A. Raymond, J.M. Melack, S.C. Doney, and S.R. Alin. 2011. Frontiers in Ecology and the Environment 9(1):53–60.

Can DNA barcodes of stream macroinvertebrates improve descriptions of community structure and water quality?

Sweeney, B.W., J.M. Battle, J.K. Jackson, and T. Dapkey. 2011. Journal of the North American Benthological Society 30(1):195–216.

The biology of the limnephilid caddisfly Dicosmoecus gilvipes (Hagen) in Northern California and Oregon (USA) streams

Resh, V.H., M. Hannaford, J.K. Jackson, G.A. Lamberti, and P.K. Mendez. 2011. Zoosymposia 5:413–419.

Eueides lampeto brownsbergensis, n. ssp.

Barbosa, P., B.G. Beckles, D. Benyamini, B. Betros, R.L. Brown, J.M. Burns, A. Caldas, J.V. Calhoun, I. Castellanos, C. Ferris, D.H. Funk, H. Gernaat, T.M. Gilligan, H.F. Greeney, M.S. Guiney, M. Hajibabaei, J.P.W. Hall, and W. Hallwachs. 2010. Journal of the Lepidopterists’ Society 64(4):224–226.

Current production by bacterial communities in microbial fuel cells enriched from wastewater sludge with different electron donors

Kan, J., L. Hsu, A.C.M. Cheung, M. Pirbazari, and K.H. Nealson. 2011. Environmental Science and Technology 45:1139–1146.

Why stream mayflies can reproduce without males but remain bisexual: a case of lost genetic variation

Funk, D.H., B.W. Sweeney, and J.K. Jackson. 2010. Journal of the North American Benthological Society 29:1258–1266.

The river discontinuum: beavers (Castor canadensis) and baseline conditions for restoration of forested headwaters

Burchsted, D., M.D. Daniels, R.M. Thorson, and J.C. Vokoun. 2010. Bioscience, 60(11): 908–921.

Dissolved CO2 in small catchment streams of eastern Amazonia: a minor pathway of terrestrial carbon loss

Davidson, E., R. Figueiredo, D. Markewitz , A.K. Aufdenkampe. 2010. Journal of Geophysical Research – Biosciences 115:G04005.

The Crabby Creek initiative: building and sustaining an interdisciplinary community partnership

Terlecki, M., D. Dunbar, C. Nielsen, C. McGauley, L. Ratmansky, N.L. Watterson, J. Hannum, K. Seidler, E. Bongiorno, O. Owens, P. Goodman, C. Marshall, S. Gill, K. Travers, J. Jackson. 2010. Journal of Community Engagement and Scholarship 3(1):40–50.

Restoring the river discontinuum: looking at the example of beaver dams

Burchsted, D., M.D. Daniels, and R.M. Thorson. 2010. Pages 1797–1806 in R.N. Palmer (editor). Proceedings of the World Environmental and Water Resources Congress 2010, Providence, Rhode Island.

Redefining the dam removal paradigm in formerly glaciated forested headwater systems

Daniels, M.D., D. Burchsted, J. MacBroom, L. Wildman, S. Harold, M. Carabetta, P. Woodworth, and G. Boardman. 2010. Pages 1750–1758 in R.N. Palmer (editor). Proceedings of the World Environmental and Water Resources Congress 2010, Providence, Rhode Island.

A preliminary water quality study of the Rio Sierpe and its tributaries (Costa Rica)

Arscott, D.B., W. Eldridge, and B.W. Sweeney. 2010. Prepared for the Blue Moon Foundation. Stroud Water Research Center, Avondale, Pennsylvania. 

A framework for analyzing longitudinal and temporal variation in river flow and developing flow-ecology relationships

Larned, S.T., D.B. Arscott, J. Schmidt, and J.C. Diett. 2010. Journal of the American Water Resources Association 46(3):541–553.

Water quality functions of a 15-year-old riparian forest buffer system

Newbold, J.D., S. Herbert, B.W. Sweeney, P. Kiry, and S.J. Alberts. 2010. Journal of the American Water Resources Association, 46(2):299–310.

Aquatic invertebrate community structure along an intermittence gradient: Selwyn River, New Zealand

Arscott, D.B., S.T. Larned, M. Scarsbrook, and P. Lambert. 2010. Journal of the North American Benthological Society 29(2):530–545.

Trophic transfer of Cd from natural periphyton to the grazing mayfly Centroptilum triangulifer in a life cycle test

Xie, L., D.H. Funk, and D.B. Buchwalter. 2010. Environmental Pollution 158:272–277.

First report of Ecpyrrhorrhoe puralis (South) (Pyraloidea: Crambidae: Pyraustinae) in North America: A naturalized exotic Pyraustine from Asia feeding on Paulownia Siebold & Zucc.

Solis, M.A., B.G. Scholtens, J.K. Adams, and D.H. Funk. 2010. The Journal of the Lepidopterists’ Society 64(1):33–35.

Complexity of secondary scientific data sources and students’ argumentative discourse

Kerlin, S., S. McDonald, and G. Kelly. 2010. International Journal of Science Education 32(9):1207–1225.

Comparison of the bacterial communities of wild and captive sponge Clathria prolifera from the Chesapeake Bay

Isaacs, L.T., J. Kan, L. Nguyen, P. Videau, M.A. Anderson, T.L. Wright and R.T. Hill. 2009. Marine Biotechnology 11:758–770.

Mitigation of nonpoint pollution by a riparian forest buffer in an agricultural watershed of the Mid-Atlantic Piedmont

Newbold, J.D., S. Herbert, and B.W. Sweeney. 2009. Stroud Preserve Watersheds National Monitoring Project Final Report.

Mayfly communities in two neotropical lowland forests

Sweeney, B.W., R.W. Flowers, D.H. Funk, S. Ávila, and J.K. Jackson. 2009. Aquatic Insects 31:311–318.

Monitoring the health of large rivers with macroinvertebrates: do dominant taxa help or hinder the assessment?

Jackson, J.K., J.M. Battle, and B.W. Sweeney. 2009. River Research and Applications 26(8):931–947.

Emerging concepts in temporary-river ecology

Larned, S.T., T. Datry, D.B. Arscott, and K. Tockner. 2010. Freshwater Biology. 55(4):717–738.

Selenium bioaccumulation and maternal transfer in the mayfly Centroptilum triangulifer in a life-cycle, periphyton-biofilm trophic assay

Conley, J.M., D.H. Funk, and D.B. Buchwalter. 2009. Environmental Science & Technology 43:7952–7957.

Hydrological indices for quantifying ecologically relevant flow conditions in intermittent alluvial plain rivers

Schmidt, J., S.T. Larned, D.B. Arscott, and J.C. Diettrich. 2009. Pages 94–102 in M. Thoms, K. Heal, E. Bogh, A. Chambel, and V. Smakhtin (editors). Ecohydrology of surface and groundwater dependent systems: concepts, methods, and recent developments. Proceedings of Symposium JS1 held at the Joint IAHS & IAH Convention, Hyderabad, India, September 2009. IAHS Publ. 328, 2009.

Mitochondrial lineages and DNA barcoding of closely related species in the mayfly genus Ephemerella (Ephemeroptera:Ephemerellidae)

Alexander, L.C., M. Delion, D.J. Hawthorne, W.O. Lamp, and D.H. Funk. 2009. Journal of the North American Benthological Society 28:584–595.

The boundless carbon cycle

Battin, T.J., S. Luyssaert, L.A. Kaplan, A.K. Aufdenkampe, A. Richter, and L.J. Tranvik. 2009. Nature Geoscience 2:598–600.

Sequential density fractionation across soils of contrasting mineralogy: evidence for both microbial- and mineral-controlled soil organic matter stabilization

Sollins, P., M. Kramer, C. Swanston, K. Lajtha, T Filley, A.K. Aufdenkampe, R. Wagai, and R.D. Bowden. 2009. Biogeochemistry 96(1–3):209–231.

Photochemical degradation of dissolved organic matter and dissolved lignin phenols from the Congo River

Spencer, R.G.M., A. Stubbins, P.J. Hernes, A. Baker, K. Mopper, A.K. Aufdenkampe, R.Y. Dyda, V.L. Mwamba, A.M. Mazedi, et al. 2009. Journal of Geophysical Research-Biogeosciences 114:G03010.

Nutrient uptake and mineralization during leaf decay in streams

Webster, J.R., J.D. Newbold, S.A. Thomas, H.M. Valett, and P.J. Mulholland. 2009. International Review of Hydrobiology 94:372–390.

Influence of tree shelters on seedling success in an afforested riparian zone

Andrews, D.M., C.D. Barton, S. J. Czapka, R.K. Kolka, and B.W. Sweeney. 2010. New Forests 39:157–167.

Electricity production coupled to ammonium in a microbial fuel cell

He Z., J. Kan, Y. Wang, Y. Huang, Mansfeld, and K.H. Nealson. 2009. Environmental Science and Technology 43:3391–3397.

Self-sustained phototrophic microbial fuel cells based on the synergistic cooperation between photosynthetic microorganisms and heterotrophic bacteria

He Z., J. Kan, F. Mansfeld, L.T. Angenent, and K.H. Nealson. 2009. Environmental Science and Technology 43:1648–1654.

Temporal dynamics of seston: a recurring nighttime peak and seasonal shifts in composition in a stream ecosystem

Richardson, D.C., L.A. Kaplan, J.D. Newbold, and A.K. Aufdenkampe. 2009. Limnology and Oceanography 54(1):344–354.

The potential influence of small dams on basin sediment dynamics and coastal erosion in Connecticut

McCusker, M.H., and M.D. Daniels. 2009. Middle States Geographer 41:82–90.

Genetic consequences of size-selective fishing: implications for viability of Chinook salmon in the Arctic-Yukon-Kuskokwim Region of Alaska

Hard, J., W. Eldridge, and K. Naish. 2009. Pages 759–780 in Sustainability of the Arctic-Yukon-Kuskokwim salmon fisheries. C.C. Krueger and C. E. Zimmerman (editors). Pacific salmon: ecology and management of western Alaska’s populations. American Fisheries Society, Bethesda, Maryland.

Mapping a science inquiry unit

Kerlin, S., S. McDonald, and G. Kelly. 2009. Journal of Classroom Interaction 43(2):4–13.

Mercury(II) bioaccumulation and antioxidant physiology in four aquatic insects

Xie, L., J.L. Flippin, N. Deighton, D.H. Funk, D.A. Dickey, and D.B. Buchwalter. 2009. Environmental Science & Technology 43:934–940.

Water quality in White Clay Creek Watershed from 1991 to 2008

Battle, J.M., and J.K. Jackson. 2008. Stream Watch Project Final Report. Stroud Water Research Center, Avondale, Pennsylvania.

Diet and abundance of the southern two-lined salamander (Eurycea cirrigera) in an agricultural area, southwest Georgia

Muenz, T.K., S.W. Golladay, L.L. Smith, and G.Vellidis. 2008. Southeastern Naturalist. 7(4):691–704.

Water quality monitoring in the source water areas for New York City: an integrative watershed approach

Arscott, D.B., A.K. Aufdenkampe, T.L. Bott, C.L. Dow, J.K. Jackson, L.A. Kaplan, J.D. Newbold, and B.W. Sweeney. 2008. Final report on monitoring activities, 2000-2005. Stroud Water Research Center, Avondale, Pennsylvania.

Reconstruction of a daily flow record along a hydrologically complex alluvial river

Rupp, D.E., S.T. Larned, D.B. Arscott, J. Schmidt. 2008. Journal of Hydrology 359:88–104.

A taxonomic reassessment of the Drunella lata (Morgan) species complex (Ephemeroptera:Ephemerellidae) in northeastern North America

Funk, D.H., B.W. Sweeney, and J.K. Jackson. 2008. Journal of the North American Benthological Society 27(3):647–663.

A new parthenogenetic mayfly (Ephemeroptera:Ephemerellidae:Eurylophella Tiensuu) oviposits by abdominal bursting in the subimago

Funk, D.H., J.K. Jackson, and B.W. Sweeney. 2008. Journal of the North American Benthological Society 27(2):269–279.

Effects of riparian vegetation and watershed urbanization on fishes in streams of the Mid-Atlantic Piedmont (USA)

Horwitz, R.J., T.E. Johnson, P.F. Overbeck, T.K. O’Donnell, W.C. Hession, and B.W. Sweeney. 2008. Journal of the American Water Resources Association 44(3):1–18.

Untangling the complex issue of dissolved organic carbon uptake: a stable isotope approach

Kaplan, L.A., T.N. Wiegner, J.D. Newbold, P.H. Ostrom, and H. Gandhi. 2008. Freshwater Biology 53:855–864.

Novel estuarine bacterioplankton in rRNA operon libraries from the Chesapeake Bay

Kan, J., S.E. Evans, F. Chen, and M.T. Suzuki. 2008. Aquatic Microbial Ecology 51:55–66.

Methods for evaluating the geomorphological performance of naturalized rivers: examples from the Chicago metropolitan area

Rhoads, B.L., M.H. Garcia, J. Rodriguez, F. Bombardelli, J. Abad, and M. Daniels. 2008. Pages 209–228 in D. Sears and S. Darby (editors). River restoration: managing the uncertainty in restoring physical habitat. John Wiley & Sons, Chichester, United Kingdom.

Biome-level biogeography in streambed microbiota

Findlay, R.H., C. Yeates, M.A.J. Hullar, D.A. Stahl, and L.A. Kaplan. 2008. Applied and Environmental Microbiology 74:3014–3021.

Perceptions of wood in rivers and challenges for stream restoration in the United States

Chin, A., M.D. Daniels, M. Urban, H. Piegay, K.J. Gregory, S.V. Gregory, E. Wohl, L. Laurencio, W. Bigler, K. Boyer, J. Grable, and M. LaFrenz. 2008. Environmental Management 41(6):893–903.

Biophysical controls on organic carbon fluxes in fluvial networks

Battin, T.J., L.A. Kaplan, S. Findlay, C.S. Hopkinson, E. Marti, A.I. Packman, J.D. Newbold, and F. Sabater. 2008. Nature Geoscience 1:95–100.

Protecting headwaters: the scientific basis for safeguarding stream and river ecosystems

Kaplan, L.A., T.L. Bott, J.K. Jackson, J.D. Newbold, and B.W. Sweeney. 2008. Research synthesis from Stroud Water Research Center, Avondale, Pennsylvania.

Assessing dam removal impacts on downstream geomorphic stability using hydrodynamic modeling

Daniels, M.D., G.C. Boardman, and P.M. Woodworth. 2008. Papers of the Applied Geography Conference 31:133–141.

Science and policy: new insights into terrestrial, aquatic, and atmospheric carbon flow and implications for stormwater management policy

Adams, S., L.A. Kaplan, and E. Ritchie. 2008. Proceedings of the Water Environment Federation WEFTEC 2008:2828-2829.

Frontiers and technological advances in microbial processes and carbon cycling in the ocean

Jiao, N.Z., C.L. Zhang, F. Chen, J. Kan, and F. Zhang. 2008. Pages 217–267 in Lea P. Mertens (editor). Biological Oceanography Research Trends. Nova Science Publishers, Inc. Hauppauge, New York.

Fractionation of lignin during leaching and sorption and implications for organic matter “freshness”

Hernes, P.J., A.C. Robinson, and A.K. Aufdenkampe. 2007. Geophysical Research Letters 34:L17401.

Diversity and quorum sensing signal production of Proteobacteria associated with marine sponges

Mohamed, N.M., E. Cicirelli, J. Kan, F. Chen, C. Fuqua, and R.T. Hill. 2008. Environmental Microbiology 10:75–86.

High temporal but low spatial heterogeneity of bacterioplankton in the Chesapeake Bay

Kan, J., M. Suzuki, K. Wang, S.E. Evans, and F. Chen. 2007. Applied and Environmental Microbiology 73:6776–6789.

The Selwyn River of New Zealand: a benchmark system for alluvial plain rivers

Larned, S.T., D.M. Hicks, J. Schmidt, A.J.H. Davey, K. Dey, M. Scarsbrook, D.B. Arscott, and R.A. Woods. 2008. River Research and Applications 24:1–24.

Mesh size affects macroinvertebrate descriptions in large rivers: examples from the Savannah and Mississippi Rivers

Battle, J.M., J.K. Jackson, and B.W. Sweeney. 2007. Hydrobiologia 592:329–343.

Primary productivity and community respiration

Bott, T.L. 2006. Pages 263–290 in F.R. Hauer and G.A. Lamberti (editors). Methods in stream ecology. 2nd edition. Elsevier, New York, New York.

Resurrecting the in-stream side of riparian forests

Sweeney, B.W. and J.G. Blaine. 2007. Journal of Contemporary Water Research and Education 136:17–27.

How planting method, weed abatement, and herbivory affect afforestation success

Sweeney, B.W., S.J. Czapka, and C. Petrow. 2007. Southern Journal of Applied Forestry 31:85–92.

Stream flow changes associated with water use and climatic variation in the lower Flint River Basin, southwest Georgia

S.W. Golladay, D.W. Hicks, and T.K. Muenz. 2007. In T. Rasmussen (editor). Proceedings of the 2007 Georgia Water Resources Conference. Athens, Georgia.

Current conditions of historical mussel habitat in the Flint River Basin, Georgia

Muenz, T.K., S.P. Opsahl, S.W. Golladay, D.W. Hicks, B.Clayton, and R.C. Thomas. 2007.  In T. Rasmussen (editor). Proceedings of the 2007 Georgia Water Resources Conference. Athens, Georgia.

Stream insect occupancy-frequency patterns and metapopulation structure

Heatherly, T., M.R. Whiles, D.J. Gibson, S.L. Collins, A.D. Huryn, J.K. Jackson, and M.A. Palmer. 2007. Oecologia 151(2):313–331.

Organic matter in the Peruvian headwaters of the Amazon: compositional evolution from the Andes to the lowland Amazon mainstem

Aufdenkampe, A.K., E. Mayorga, J.I. Hedges, C. Llerena, P.D. Quay, J. Gudeman, A.V. Krusche and J.E. Richey. 2007. Organic Geochemistry 38(3):337–364.

Annual and spatial variation for macroinvertebrates in the Upper Mississippi River near Cape Girardeau, Missouri

Battle, J.M., J.K. Jackson, and B.W. Sweeney. 2007. Fundamental and Applied Limnology Archiv für Hydrobiology 168(1):39–54.

Primary productivity in receiving reservoirs: links to influent streams

Bott, T.L., D.S. Montgomery, D.B. Arscott, and C.L. Dow. 2006. Journal of the North American Benthological Society 25(4):1045–1061.

Macroinvertebrate distribution in relation to land use and water chemistry in New York City drinking-water-supply watersheds

Kratzer, E.B., J.K. Jackson, D.B. Arscott, A.K. Aufdenkampe, C.L. Dow, L.A. Kaplan, J.D. Newbold, and B.W. Sweeney. 2006. Journal of the North American Benthological Society 25:954–976.

Organic matter transport in New York City drinking-water-supply watersheds

Kaplan, L.A., J.D. Newbold, D.J. Van Horn, C.L. Dow, A.K. Aufdenkampe, and J.K. Jackson. 2006. Journal of the North American Benthological Society 25:912–927.

Survey and relocation study of unionids in Chickasawhatchee Creek and Elmodel Wildlife Management areas, southwest Georgia

Golladay, S.W., and T.K. Muenz. 2006. Final Report. Georgia Department of Natural Resources.

Bacterioplankton community in Chesapeake Bay: predictable or random assemblages

Kan, J., B.C. Crump, K. Wang, and F. Chen. 2006. Limnology and Oceanography 51:2157–2169.

Uptake of nutrients and organic C in streams in New York City drinking-water-supply watersheds

Newbold, J.D., T.L. Bott, L.A. Kaplan, C.L. Dow, J.K. Jackson, A.K. Aufdenkampe, L.A. Martin, D.J. Van Horn, and A.A. Long. 2006. Journal of the North American Benthological Society 25(4):998–1017.

Molecular tracers of soot and sewage contamination in streams supplying New York City drinking water

Aufdenkampe, A.K., D.B. Arscott, C.L. Dow, and L.J. Standley. 2006. Journal of the North American Benthological Society 25(4):928–953.

Ecosystem metabolism in streams of the Catskill Mountains (Delaware and Hudson River watersheds) and Lower Hudson Valley

Bott, T.L., D.S. Montgomery, J.D. Newbold, D.B. Arscott, C.L. Dow, A.K. Aufdenkampe, J.K. Jackson, and L.A. Kaplan. 2006. Journal of the North American Benthological Society 25(4):1018–1044.

Landscape template of New York City’s drinking-water-supply watersheds

Arscott, D.B., C.L. Dow, and B.W. Sweeney. 2006. Journal of the North American Benthological Society 25(4):867–886.

Role of rarity and taxonomic resolution in a regional and spatial analysis of stream macroinvertebrates

Arscott, D.B., J.K. Jackson, and E.B. Kratzer. 2006. Journal of the North American Benthological Society 25(4):977–997.

Relating major ions and nutrients to watershed conditions across a mixed-use, water-supply watershed

Dow, C.L., D.B. Arscott, and J.D. Newbold. 2006. Journal of the North American Benthological Society 25(4):887–911.

Exploring the links between geomorphology and ecology

Urban, M.A., and M.D. Daniels. 2006. Geomorphology 77(3–4): 203–206.

Taxonomy and genetics of the parthenogenetic mayfly Centroptilum triangulifer and its sexual sister Centroptilum alamance (Ephemeroptera:Baetidae)

Funk, D.H., J.K. Jackson, and B.W. Sweeney. 2006. Journal of the North American Benthological Society 25(2):417–429.

Enhanced source-water monitoring for New York City: historical framework, political context, and project design

Blaine, J.G., B.W. Sweeney, and D.B. Arscott. 2006. Journal of the North American Benthological Society 25(4):851–866.

Enhanced source-water monitoring for New York City: summary and perspective

Sweeney, B.W., D.B. Arscott, C.L. Dow, J.G. Blaine, A.K. Aufdenkampe, T.L. Bott, J.K. Jackson, L.A. Kaplan, and J.D. Newbold. 2006. Journal of the North American Benthological Society 25(4):1062–1067.

Ecosystem metabolism in Piedmont streams: reach geomorphology modulates the influence of riparian vegetation

Bott, T.L., J.D. Newbold, and D.B. Arscott. 2006. Ecosystems 9:398–421.

Biodegradable dissolved organic matter in a temperate and a tropical stream determined from ultra-high resolution mass spectrometry

Kim, S., L.A. Kaplan, and P.G. Hatcher. 2006. Limnology and Oceanography 51:1054–1063.

Long-term studies of aquatic invertebrates: frequency, duration, and ecological significance

Jackson, J.K., and L. Füreder. 2006. Freshwater Biology 51(3):591–603.

Grain-size sorting in meander bends containing large woody debris

Daniels, M.D. 2006. Physical Geography 24(7):348–362.

Measuring watershed health: training conservation planners how to use biophysical tools for monitoring streams in neo-tropical ecosystems

Sweeney, B.W., et al. 2006. Moore Foundation Peru Project Final Report. Stroud Water Research Center, Avondale, Pennsylvania.

Assessment of stream habitat in the Flint River Basin

Muenz, T.K., S.P. Opsahl, S.W. Golladay, D.W. Hicks, B. Clayton, K.A. Cressman. 2006. Final report to the U.S. Fish and Wildlife Service.

Stream buffer effectiveness in an agriculturally influenced area, southwestern Georgia: responses of water quality, macroinvertebrates, and amphibians

Muenz, T.K., S.W. Golladay, G. Vellidis, and L.L. Smith. 2006. Journal of Environmental Quality. 35(5):1924–1938.

Recurring seasonal dynamics of microbial communities in stream habitats

Hullar, M. A. J., L. A. Kaplan, and D. A. Stahl. 2006. Applied and Environmental Microbiology 72:713–722.

Diverse and unique picocyanobacteria found in the Chesapeake Bay

Chen, F., K. Wang, J. Kan, M. Suzuki, E. Wommack, and W. Coats. 2006.  Applied and Environmental Microbiology 72(3): 2239–2243.

Atlantic coast rivers of the northeastern United States

Jackson, J.K., A.D. Huryn, D.L. Strayer, D.L. Courtemanch, and B.W. Sweeney. 2005. Pages 21-71 in A.C. Benke and C.E. Cushing (editors). Rivers of North America. Academic Press, San Diego, California.

Isolation and characterization of a small nuclear inclusion virus infecting the diatom Chaetoceros c.f. gracilis

Bettarel, Y., J. Kan, K. Wang, S. Cooney, K. Williamson, F. Chen, E. Wommack, and W. Coats. 2005. Aquatic Microbial Ecology 40:103–114.

Deposition, benthic residence, and resuspension of fine organic particles in a mountain stream

Newbold, J.D., S.A. Thomas, G.W. Minshall, C.E. Cushing, and T. Georgian. 2005. Limnology and Oceanography 50:1571–1580.

Metaproteomic analysis of Chesapeake Bay microbial communities

Kan, J., T.E. Hanson, J.M. Ginter, K. Wang, and F. Chen. 2005. Saline Systems 1:7.

Synthesis of 13C-labeled tracer for stream DOC: labeling tulip poplar carbon with 13CO2

Wiegner, T.N., L.A. Kaplan, J.D. Newbold, and P.H. Ostrom. 2005. Ecosystems 8:501–511.

Young organic matter as a source of carbon dioxide outgassing from Amazonian rivers

Mayorga, E., A.K. Aufdenkampe, C.A. Masiello, A.V. Krusche, J.I. Hedges, P.D. Quay, and J.E. Richey. 2005. Nature 436(7050):538–541.

Lateral organization of aquatic invertebrates along the continuum of a braided-floodplain river

Arscott, D.B., K. Tockner, J.V. Ward. 2005. Journal of the North American Benthological Society 24:934–945.

Scientific underpinnings of sediment quality guidelines

Bately, G.E., R.G. Stahl Jr., M.P. Babut, T.L. Bott, et al. 2005. Pages 39–119 in R.W. Wenning, G. Batley, C. Ingersoll, and D.W. Moore (editors). Use of sediment quality guidelines and related tools for the assessment of contaminated sediments. Proceedings from the Pellston Workshop on Use of Sediment Quality Gulidelines and Related Tools for the Assessment of Contaminated Sediments, Fairmont, Montana.

Fluctuations of dissolved organic matter in river used for drinking water and impacts on conventional treatment plant performance

Volk, C., L.A. Kaplan, J. Robinson, B. Johnson, L. Wood, H.W. Zhu, and M. LeChevallier. 2005. Environmental Science and Technology 39(11):4258–4264.

Historic and current unionid mussel distribution in tributaries of the lower Flint River, southwestern Georgia: an examination of current and historical trends

Chastain, C.A., S.W. Golladay, and T.K. Muenz. 2005. Proceedings of the Georgia Water Resources Conference. Athens, Georgia.

Using Adopt-a-Stream in the coastal plain: a case study in southwest Georgia

Muenz, T.K., S.W. Golladay, L.L. Smith, and G. Vellidis. 2005. Pages 819–822 in K. Hatcher (editor). Proceedings of the 2005 Georgia Water Resources Conference. Athens, Georgia.

Efeitos das mudanças do uso da terra na biogeoquímica dos corpos d’água da bacia do rio Ji-Paraná Rondônia

Krusche, A.V., M.V.R. Ballester, R.L. Victoria, M.C. Bernardes, N.K. Leite, L. Hanada, R. Marcondes, D.dC. Victoria, A.M. Toledo, J.P. Ometto, M.Z. Moreira, B.M. Gomes, M.A. Bolson, S.G. Neto, N. Bonelli, L. Deegan, C. Neill, S. Thomas, A.K. Aufdenkampe, and J.E. Richey. 2005. Acta Amazônica 35(2):197–205.

Contribution of dissolved organic carbon to stream metabolism estimated with 13C-enriched tree tissue leachate

Wiegner, T.N., L.A. Kaplan, J.D. Newbold, and P.H. Ostrom. 2005. Journal North American Benthological Society 24:48–67.

The role of organic matter in structuring microbial communities

Kaplan, L., M. Hullar, L. Sappelsa, D. Stahl, P. Hatcher, and S. Frazier. 2005. American Water Works Association, Denver, Colorado.

Molecular characterization of biodegradable dissolved organic matter using bioreactors and [12C/13C] tetramethylammonium hydroxide thermochemolysis GC-MS

Frazier, S.W., L.A. Kaplan, and P.G. Hatcher. 2005. Environmental Science and Technology 39:1479–1491.

Techniques for measuring biodegradable organic matter

Kaplan, L., F. Ribas, and D. Reasoner. 2005. In Biodegradable organic matter in drinking water treatment and distribution. Prevost et al.(editors). American Water Works Association, Denver, Colorado.

Hydrogen-deficient molecules in natural riverine water samples — evidence for the existence of black carbon in DOM

Kim, S., L.A. Kaplan, R. Benner, and P.G. Hatcher. 2004. Marine Chemistry 92:225–234.

Assessment of microbial dynamics in the Pearl River Estuary by 16S rRNA terminal restriction fragment analysis

Wu, M., L. Song, J. Ren, J. Kan, and P. Qian. 2004. Continental Shelf Research 24:1925–1934.

Riparian deforestation, stream narrowing, and loss of stream ecosystem services

Sweeney, B.W., T.L. Bott, J.K. Jackson, L.A. Kaplan, J.D. Newbold, L.J. Standley, W.C. Hession, and R.J. Horwitz. 2004. Proceedings of the National Academy of Sciences 101(30):14132–14137.

Riverine organic matter composition as a function of land use changes, southwest Amazon

Bernardes, M.C., L.A. Martinelli, A.V. Krusche, J. Gudeman, M. Moreira, R.L. Victoria, J.P.H.B. Ometto, M.V.R. Ballester, A.K. Aufdenkampe, et al. 2004. Ecological Applications 14(4):S263–S279.

Phylogenetic diversity of Synechococcus in the Chesapeake Bay revealed by Ribulose-1, 5-bisphosphate carboxylase-oxygenase (RuBisCO) large subunit gene (rbcL) sequences

Chen, F., K. Wang, J. Kan, D. Bachoon, J. Lu, S. Lau, and L. Campbell. 2004. Aquatic Microbial Ecology 36:153–164.

Riparian forest restoration: why each site needs an ecological prescription

Sweeney, B.W. and S.J. Czapka. 2004. Forest Ecology and Management 192:361–373.

Isotopic (13C) analysis of dissolved organic carbon in stream water samples using an elemental analyzer coupled to a stable isotope ratio mass spectrometer

Gandhi, H., T.N. Wiegner, P.H. Ostrom, L.A. Kaplan, N.E. Ostrom. 2004. Rapid Communications in Mass Spectrometry 18:903–906.

Assessment of TOC analytical accuracy

L.A. Kaplan. 2004. American Water Works Association, Denver, Colorado.

Spatial patterns of turbulence kinetic energy and shear stress in a meander bend with large woody debris

Daniels, M.D., and B.L. Rhoads. 2004. In S. Bennett and A. Simon (editors). Riparian vegetation and fluvial geomorphology. American Geophysical Union, Washington, D.C.

Spatio-temporal patterns of benthic invertebrates along the river continuum of a braided Alpine river

Arscott, D.B., K. Tockner, and J.V. Ward. 2003. Archiv für Hydrobiologie 158:431–460.

Contributions of microbial biofilms to ecosystem processes in stream mesocosms

Battin, T.J., L.A. Kaplan, J.D. Newbold, and C.E. Hansen. 2003b. Nature 426:439–442.

Sources and distribution of organic carbon and nitrogen in the Tagliamento River, Italy

Kaiser, E., D.B. Arscott, K. Tockner, and B. Sulzberger. 2004. Aquatic Sciences 66:103–116.

Characterization of organic matter from natural waters using tetramethylammonium hydroxide thermochemolysis GC-MS

Frazier, S.W., K.O. Nowack, K.M. Goins, F.S. Cannon, L.A. Kaplan, and P.G. Hatcher. 2003. Journal of Analytical and Applied Pyrolysis 70:99–128.

Where rivers are born: the scientific imperative for defending small streams and wetlands

Meyer, J.L., L.A. Kaplan, J.D. Newbold, D.L. Strayer, C.J. Woltemade, J.B. Zedler, R. Beilfuss, Q. Carpenter, R. Semlitsch, M.C. Watzin, and P.H. Zedler. 2003. Published by Sierra Club and American Rivers.

Simultaneous analyses of neutral carbohydrates and amino sugars in freshwaters with HPLC-PAD

Cheng, X., and L. A. Kaplan. 2003. Journal of Chromatographic Science 41:434–438.

Effects of current velocity on the nascent architecture of stream microbial biofilms

Battin, T.J., L.A. Kaplan, J.D. Newbold, X. Cheng, and C. Hansen. 2003c. Applied and Environmental Microbiology 63:5443–5452.

The Tagliamento River: a model ecosystem of European importance

Tockner, K., J.V. Ward, D.B. Arscott, P.J. Edwards, J. Kollmann, A.M. Gurnell, G.E. Petts, B. Maiolini. 2003. Aquatic Sciences 65:239–253.

Habitat structure and Trichoptera diversity in two headwater flood plains, N.E. Italy

Arscott, D.B., B. Keller, K. Tockner, and J.V. Ward. 2003. International Review of Hydrobiology 88:255–273.

Dietary and stable isotope (δ 13C, δ 15N) analyses in alpine stream insects

Füreder, L., C. Welter, and J.K. Jackson. 2003. International Review of Hydrobiology 88:314–331.

A mixing model analysis of stream solute dynamics and the contribution of a hyporheic zone to ecosystem function

Battin, T.J., L.A. Kaplan, J.D. Newbold, and S.P. Hendricks. 2003a. Freshwater Biology 48:995–1014.

Stream macroinvertebrates and amphibians as indicators of ecosystem stress: a case study from the Coastal Plain, Georgia

Muenz, T.K., S.W. Golladay, G. Vellidis, and L.L. Smith. 2003. Pages 354–357 in K. Hatcher (editor). Proceedings of the 2003 Georgia Water Resources Conference. Athens, Georgia.

Coupling of hydrodynamical, biological, and geochemical processes in streambeds

Packman, A.I., T.J. Battin, and J.D. Newbold. 2003. Archives of Hydro-Engineering and Environmental Mechanics 50:107–123.

Influence of a large woody debris obstruction on three-dimensional flow structure in a meander bend

Daniels, M.D., and B.L. Rhoads. 2003. Geomorphology 51:159–173.

Dissolved organic carbon measurement using a modified high temperature DOC analyzer

Peterson, M.L., A.K. Aufdenkampe, S. Lang and J.I. Hedges. 2003. Marine Chemistry 81(1–2):89–104.

Comparison of corn pollen and natural fine particulate matter transport in streams: can pollen be used as a seston surrogate?

Georgian, T., J.D. Newbold, S.A. Thomas, M.T. Monaghan, G.W. Minshall, and C.E. Cushing. 2003. Journal of the North American Benthological Society 22:2–15.

Dietary and stable isotope (δ 13C, δ 15N) analyses in alpine Ephemeroptera and Plecoptera

Füreder, L., C. Welter, and J.K. Jackson. 2003. Dietary and stable isotope (δ13C, δ15N) analyses in alpine Ephemeroptera and Plecoptera. Pages 39-46 in E. Gaino (editor). Research Update on Ephemeroptera and Plecoptera. University of  Perugia, Perugia, Italy.

The recovery of nesting habitat: a proactive approach for conservation of the hawksbill sea turtle, Eretmochelys imbricata, Long Island, Antigua, West Indies

Muenz, T.K., and K.M. Andrews. 2002. Proceedings of the Twenty-third Symposium on Sea Turtle Biology. Miami, Florida.

Aquatic habitat dynamics along a braided alpine river ecosystem (Tagliamento River, Northeast Italy)

Arscott, D.B., K. Tockner, D. van der Nat, and J.V. Ward. 2002. Ecosystems 5:802–814.

The role of monomers in stream ecosystem metabolism

Kaplan, L.A., and J.D. Newbold. 2002. Pages 97–119 in S. E. G. Findlay and R. L. Sinsabaugh (editors). Aquatic Ecosystems — Interactivity of Dissolved Organic Matter. Academic Press, Cambridge, Massachusetts.

Larval black fly (Diptera: Simuliidae) distribution and diversity along a floodplain river in the Alps (Tagliamento River, Italy)

Arscott, D.B., R. Glatthaar, K. Tockner, J.V. Ward. 2002. Verhandlungen Internationale Vereinigung Limnologie 28:524–531.

Replicated field experiments examining the effects of Bti on black flies and nontarget macroinvertebrates and fish in a large river

Jackson, J.K., R.J. Horwitz, and B.W. Sweeney. 2002. Transactions of the American Fisheries Society 131(5):910–930.

Integrating science and technology to support stream naturalization near Chicago, Illinois

Wade, R.J., B.L. Rhoads, J. Rodriguez, M.D. Daniels, D. Wilson, E.E. Herricks, F. Bombardelli, M. Garcia, and J. Schwartz. 2002. Journal of the American Water Resources Association 38(4):931–944.

Controls on new production: the role of iron and physical processes

Aufdenkampe, A.K., and J.W. Murray. 2002. Deep Sea Research Part II: Topical Studies in Oceanography 49(13–14):2649–2668.

Biogeochemical controls on new production in the tropical Pacific

Aufdenkampe, A.K., J.J. McCarthy, C. Navarette, M. Rodier, J. Dunne, and J.W. Murray. 2002. Deep Sea Research Part II: Topical Studies in Oceanography 49(13-14):2619–2648.

Riparian forest restoration: increasing success by reducing plant competition and herbivory

Sweeney, B.W., S.J. Czapka, and T. Yerkes. 2002. Restoration Ecology 10(2):1–9.

Outgassing from Amazonian rivers and wetlands as a large tropical source of atmospheric CO2

Richey, J.E., J.M. Melack, A.K. Aufdenkampe, V.M. Ballester, and L.L. Hess. 2002. Nature 416:617–620.

Riverine landscape diversity

Ward, J.V., K. Tockner, D.B. Arscott, C. Claret. 2002. Freshwater Biology 47: 517–539.

Effects of Bacillus thuringiensis israelensis on black flies and nontarget macroinvertebrates and fish in a large river

Jackson, J.K., R.J. Horwitz, and B.W. Sweeney. 2002. Transactions of the American Fisheries Society 131:910–930.

Determination of relative survival of two stocked walleye populations and resident natural origin fish by microsatellite DNA parentage assignment

Eldridge, W., M. Bacigalupi, I. Adelman, L. Miller, and A. Kapuscinski. 2002. Canadian Journal of Fisheries and Aquatic Sciences 59(2):282–290.

Monitoring dissolved organic carbon in surface and drinking waters

Volk, C., L. Wood, B. Johnson, J. Robinson, H.W. Zhu, L. Kaplan. 2002. Journal of Environmental Monitoring 4(1):43–47.

Assessment of relative accuracy in the determination of organic matter concentrations in aquatic systems

Aiken, G., L.A. Kaplan, and J. Weishaar. 2002. Journal of Environmental Monitoring. 4:70–74.

The role of sorptive processes in the organic carbon and nitrogen cycles of the Amazon River basin

Aufdenkampe, A.K. 2002. Ph.D. Dissertation. University of Washington, School of Oceanography, Seattle, Washington.

The processing of bioactive elements by the Amazon River system

Mayorga, E., and A.K. Aufdenkampe. 2002. Pages 1–24 in M.E. McClain (editor). The ecohydrology of South American rivers and wetlands. International Association of Hydrological Sciences Special Publication No. 6. IAHS Press, Wallingford, UK.

Thermal heterogeneity along a braided floodplain river in the Alps (Tagliamento River, N.E. Italy)

Arscott, D.B., K. Tockner, and J.V. Ward. 2001. Canadian Journal of Fisheries and Aquatic Sciences 58:2359–2373.

Sorptive fractionation of dissolved organic nitrogen and amino acids onto sediments within the Amazon Basin

Aufdenkampe, A.K., J.I. Hedges, A.V. Krusche, C. Llerena, and J.E. Richey. 2001. Limnology and Oceanography 46(8):1921–1935.

Using reference sites and simple linear regression to estimate long-term water levels in Coastal Plain streams

Zampella, R.A., C.L. Dow, and J.B. Bunnell. 2001. Journal of the American Water Resources Association 37(5):1189–1201.

The influence of particle size on the deposition of seston in streams

Thomas, S.A., J.D. Newbold, M.T. Monaghan, G.W. Minshall, T. Georgian, and C.E. Cushing. 2001. Limnology and Oceanography 46:1425–1424.

The influence of filter-feeding benthic macroinvertebrates on the transport and deposition of particulate organic matter and diatoms in two streams

Monaghan, M.T., S.A. Thomas, G.W. Minshall, J.D. Newbold, and C.E. Cushing. 2001. Limnology and Oceanography 46:1091–1099.

Physical factors influencing fine organic particle transport and deposition in streams

Minshall, G.W., S.A. Thomas, J.D. Newbold, M.T. Monaghan, and C.E. Cushing. 2000. Journal of the North American Benthological Society 18:1–16.

Estimation of new production in the tropical Pacific

Aufdenkampe, A.K., J.J. McCarthy, M. Rodier, C. Navarette, J.P. Dunne, and J.W. Murray. 2001. Global Biogeochemical Cycles 15(1):101–113.

Influence of stream size on ammonium and suspended particulate nitrogen processing

Wollheim, W.M., B.J. Peterson, L.A. Deegan, J.E. Hobbie, B. Hooker, W.B. Bowden, K.J. Edwardson, D.B. Arscott, and A.E. Hershey. 2001. Limnology and Oceanography 46:1–13.

Improved analysis of dissolved carbohydrates in stream water

Cheng, X., and L. A. Kaplan. 2001. Analytical Chemistry 73:458–461.

Aquatic habitat diversity along the corridor of an alpine floodplain river (Fiume Tagliamento, Italy).

Arscott, D.B., K. Tockner, and J.V. Ward. 2000. Archiv für Hydrobiologie 49:679–704.

Organic matter in Bolivian tributaries of the Amazon River: a comparison to the lower mainstem

Hedges, J.I., E. Mayorga, E. Tsamakis, M.E. McClain, A.K. Aufdenkampe, P. Quay, J.E. Richey, R. Benner, S. Opsahl, et al. 2000. Limnology and Oceanography 45(7):1449–1466.

Specific conductance and pH as watershed disturbance indicators in streams of the New Jersey Pinelands, U.S.A.

Dow, C.L., and R.A. Zampella. 2000. Environmental Management 26(4):437–445.

Trends in evaporation and Bowen Ratio on urbanizing watersheds in eastern United States

Dow, C.L., and D.R. DeWalle. 2000. Water Resources Research 36(7):1835–1843.

Molecular tracers of organic matter sources to surface water resources

Standley, L.J., L.A. Kaplan, and D. Smith. 2000. Environmental Science and Technology 34:3124–3130.

Effects of desiccation and temperature/irradiance on the metabolism of two arctic stream bryophyte taxa

Arscott, D.B., W.B. Bowden, and J.C. Finlay. 2000. Journal of the North American Benthological Society 19:263–273.

Comparison of three TOC methodologies

Kaplan, L. A. 2000. A broad-scale comparison of DOC methodologies. Journal of the American Water Works Association 92:149–156.

The effect of formalin and Lugol’s iodine solution on protozoal cell volume

Zinabu, G.M., and T.L. Bott. 2000. Limnologica 30:59–63.

Freshwater Microbiology

Kaplan, L.A. and A.E. Konopka. 2000. Pages 438–450 in J. Lederberg (editor). Encyclopedia of microbiology. 2nd edition. Academic Press, San Diego, California.

Courtship role reversal and deceptive signals in the long-tailed dance fly, Rhamphomyia longicauda

Funk, D.H., and D.W. Tallamy. 2000. Animal Behaviour 59(2):411–421.

Surface and subsurface dissolved organic carbon

Kaplan, L.A., and J.D. Newbold. 2000. Pages 237–258 in J.B. Jones and P.J. Mulholland (editors). Streams and ground waters. Academic Press, Cambridge, Massachusetts.

Paired comparisons of effects of type of riparian vegetation on stream fishes: implications for restoration

Horwitz, R.J., W.C. Hession, and B.W. Sweeney. 2000. American Water Resources Association 197–202.

Grazing of protozoa, bacteria, and diatoms by meiofauna in lotic epibenthic communities

Bott, T.L., and M.A. Borchardt. 1999. Journal of the North American Benthological Society 18(4):499–513.

Long-term movements of self-marked caddisfly larvae (Trichoptera: Sericostomatidae) in a coastal mountain stream, California, USA

Jackson, J.K., E.P. McElravy, and V.H. Resh. 1999. Freshwater Biology 42(3):525–536.

National Climbing Plan B: Study on better quality and disease resistance of marine aquaculture (III)

Kan, J., et al., 1999. In B. Wu (editor). Reproduction, attachment, and metamorphosis of mollusks. Shandong Science and Technology Press, Jinan, P. R. China.

Review of Tropical Asian streams: Zoobenthos, ecology and conservation by D. Dudgeon

Jackson, J.K. 1999. Journal of the North American Benthological Society 18:427–428.

Silicon-nitrogen coupling in the equatorial Pacific upwelling zone

Dunne, J.P., J.W. Murray, A.K. Aufdenkampe, S. Blain, and M. Rodier. 1999. Global Biogeochemical Cycles 13(3):715–726.

Roles of bryophytes in stream ecosystems

Stream Bryophyte Group. 1999. Journal of the North American Benthological Society 18:151–184.

Detecting baseflow trends in Coastal Plain streams

Dow, C.L. 1999. Journal of the American Water Resources Association 35(2):349–362.

Type 2 diabetes: evidence for linkage on chromosome 20 in 716 Finnish affected sib-pairs

Ghosh, S., et al. 1999. Proceedings of the National Academy of Science, USA 96(5):2198–2203.

The role of microorganisms in the ecological connectivity of running waters

Pusch, M., D. Fiebig, I. Brettar, H. Eisenmann, B.K. Ellis, L.A. Kaplan, M.A. Lock, M.W. Naegeli, and W. Traunspurger. 1998. Freshwater Biology 40(3):453–495.

Structure and function of stream biota

Jackson, J.K. 1998. In Stream corridor restoration: principles, processes and practices. Federal Interagency Stream Restoration Working Group, USDA Natural Resources Conservation Service, PB98-158348LUW.

A study on induced metamorphosis of larvae of the Bay Scallop Argopecten irradians

Hong, X., Y. Yang, and J. Kan. 1998. Journal of Oceanography of Huanghai and Bohai Seas. 16(3):47–51.

Isolation and analysis of lignin-derived phenols in aquatic humic substances: improvements on the procedures

Standley, L.J., and L.A. Kaplan. 1998. Organic Geochemistry 28(11):689–697.

Comparison of epilithic algal and bryophyte metabolism in an arctic tundra stream, Alaska

Arscott, D.B., W.B. Bowden, and J.C. Finlay. 1998. Journal of the North American Benthological Society 17:210–227.

Dissolved carbohydrate concentration, composition, and bioavailability to microbial heterotrophs in stream water

Gremm, T.J., and L.A. Kaplan. 1998. CLEAN–Soil, Air, Water 26(3):167–171.

Effects of trifluoroacetate, an atmospheric breakdown product of hydrofluorocarbon refrigerants, on acetate metabolism by freshwater benthic microbial communities

Bott, T.L., and L.J. Standley. 1998. Bulletin of Environmental Contamination and Toxicology 60(3):472–479.

Trifluoroacetate, an atmospheric breakdown product of hydrofluorocarbon refrigerants: biomolecular fate in aquatic organisms

Standley, L.J., and T.L. Bott. 1998. Environmental Science and Technology 32:469–475.

Method of determining the effect of a test substance on a clone of a Centroptilum triangulifer mayfly

Sweeney, B.W., D.H. Funk, and L.J. Standley. 1997. US Patent 5,665,555.

Water quality functions of riparian forest buffer systems in the Chesapeake Bay Watersheds

Lowrance, R., L.S. Altier, J.D. Newbold, R.R. Schnabel, P.M. Groffman, J.M. Denver, D.L. Correll, J.W. Gilliam, J.L. Robinson, R.B. Brinsfield, K.W. Staver, W.C. Lucas, and A.H. Todd. 1997. Environmental Management 21:687–712.

Turbulent transport of suspended particles and dispersing benthic organisms: how long to hit bottom?

McNair, J.N., J.D. Newbold, and D.D. Hart. 1997. Journal of Theoretical Biology 188:29–52.

Sulfur and nitrogen budgets for five forested Appalachian Plateau Basins

Dow, C.L., and D.R. DeWalle. 1997. Hydrological Processes 11:801–816.

Organic matter dynamics in White Clay Creek, Pennsylvania, USA

Newbold, J.D., T.L. Bott, L.A. Kaplan, B.W. Sweeney, and R.L. Vannote. 1997. Journal of the North American Benthological Society 16:46–50.

Dissolved carbohydrates in streamwater determined by HPLC and pulsed amperometric detection

Gremm, T.J., and L.A. Kaplan. 1997. Limnology and Oceanography 42(2):385–393.

Chemical composition of biodegradable dissolved organic matter in streamwater

Volk, C.J., Volk, C.B., and L.A. Kaplan. 1997. Limnology and Oceanography 42(1):39–44.

Biology of Gumaga nigricula (McL.) in a northern California stream

Resh, V.H., J.R. Wood, E.A. Bergey, J.W. Feminella, J.K. Jackson, and E.P. McElravy. 1997. Pages 401–410 in Proceedings of the 8th International Symposium on Trichoptera. Ohio Biological Survey.

An evaluation of techniques for measuring periphyton metabolism in chambers

Bott, T.L., J.T. Brock, A. Baattrup-Pedersen, P. Chambers, W.K. Dodds, K. Himbeault, J.R. Lawrence, D. Planas, E. Snyder, and G.M. Wolfaardt. 1997. Canadian Journal of Fisheries and Aquatic Sciences 54:715–725.

Measurement of streamwater biodegradable dissolved organic carbon with a plug-flow bioreactor

Kaplan, L.A., and J.D. Newbold. 1995. Water Research 29(12):2696–2706.

Water quality functions of riparian forest buffer systems in the Chesapeake Bay Watershed

Lowrance, R., L.S. Altier, J.D. Newbold, et al. 1995. Chesapeake Bay Program Technology Transfer Report. U.S. Environmental Protection Agency, EPA 903-R-95-004 CBP/TRS 134/95.

Impact on water quality of high and low density applications of spent mushroom substrate to agricultural lands

Kaplan, L.A., L.J. Standley, and J.D. Newbold. 1995. Compost Science and Utilization 3:55–63.

Organochlorine pesticides in stream mayflies and terrestrial vegetation of undisturbed tropical catchments exposed to long-range atmospheric transport

Standley, L. J., and B. W. Sweeney. 1995. Journal of the North American Benthological Society 14:38–49.

Research in tropical streams and rivers: introduction to a series of papers

Jackson, J.K., and B.W. Sweeney. 1995. Journal of the North American Benthological Society 14:2–4.

Present status and future directions of tropical stream research

Jackson, J.K., and B.W. Sweeney. 1995. Journal of the North American Benthological Society 14:5–11.

Concentrations and export of solutes from six mountain streams in northwestern Costa Rica

Newbold, J.D., B.W. Sweeney, J.K. Jackson, and L.A. Kaplan. 1995. Journal of the North American Benthological Society 14:21–37.

Egg and larval development times for 35 species of tropical stream insects from Costa Rica

Jackson, J.K., and B.W. Sweeney. 1995. Journal of the North American Benthological Society 14:115–130.

Semivoltinism, seasonal emergence, and adult size variation in a tropical stream mayfly (Euthyplocia hecuba)

Sweeney, B.W., J.K. Jackson, and D.H. Funk. 1995. Journal of the North American Benthological Society 14(1):131–146.

Maternal transfer of chlordane and its metabolites to the eggs of a stream mayfly Centroptilum triangulifer

Standley, L.J., B.W. Sweeney, and D.H. Funk. 1994. Environmental Science & Technology 28(12):2105–2111.

The larvae of Eastern North American Eurylophella Tiensuu (Ephemeroptera: Ephemerellidae)

Funk, D.H. and B.W. Sweeney. 1994. Transactions of the American Entomological Society 120(3):209–286.

Blizzard’s effects on Appalachian stream chemistry assessed

Dow, C.L., D.R. DeWalle, J.A. Lynch, and W.E. Sharpe. 1994. Eos: Earth and Space Science News 75(34):389.

A model for seasonal synchrony in stream mayflies

Newbold, J.D., B. W. Sweeney, and R. L. Vannote. 1994. Journal North American Benthological Society 13:3–18.

A survey of BOM in US drinking waters

Kaplan, L.A., D.J. Reasoner, and E.W. Rice. 1994. Journal of the American Water Works Association 86(2):121–132.

Transport of Bacillus thuringiensis var. israelensis and its effect on drift and benthic densities of nontarget macroinvertebrates in the Susquehanna River, northern Pennsylvania

Jackson, J.K., B.W. Sweeney, T.L. Bott, J.D. Newbold, and L.A .Kaplan. 1994. Canadian Journal of Fisheries and Aquatic Sciences 51:295–314.

An immobilized biofilm reactor for the measurement of biodegradable organic matter in drinking water: validation and field test

Kaplan, L.A., F. Ribas, J.-C. Joret, C. Volk, J. Frias, and F. Lucena. 1993. Pages  1457–1475 in Proceedings of the Water Quality Technology Conference, Miami, Florida.

Transport dynamics of fine particulate organic matter in two Idaho streams

Cushing, C.E., G.W. Minshall, and J.D. Newbold. 1993. Limnology and Oceanography. 38:1101–1115.

Effects of streamside vegetation on macroinvertebrate communities of White Clay Creek in eastern North America

Sweeney, B. W. 1993. Proceedings of the Academy of Natural Sciences of Philadelphia 144:291–340.

Evaluation and simplification of the assimilable organic carbon nutrient bioassay for bacterial growth in drinking water

Kaplan, L.A., T.L. Bott, and D.J. Reasoner. 1993. Applied and Environmental Microbiology 59(5):1532–1539.

Development of a rapid assimilable organic carbon method for water

LeChevallier, M.W., N.E. Shaw, L.A. Kaplan, and T.L. Bott. 1993. Applied and Environmental Microbiology 59:1526–1531.

Rapid assessment approaches in benthic macroinvertebrate biomonitoring studies

Resh, V.H., and J.K. Jackson. 1993. Pages 195-233 in D.M. Rosenberg and V.H. Resh (editors). Freshwater biomonitoring and benthic macroinvertebrates. Chapman and Hall, New York, New York.

Use of the stream mayfly Cloeon triangulifer as a bioassay organism: life history response and body burden following exposure to technical chlordane

Sweeney, B.W., D.H. Funk, and L.J. Standley. 1993. Environmental Toxicology and Chemistry 12(1):115–125.

Sources and biogeochemistry of terrestrial dissolved organic carbon entering streams

Kaplan, L.A., and J.D. Newbold. 1993. Pages 139–165 in T.E. Ford (editor). Aquatic microbiology: an ecological approach. Blackwell Scientific Publications, Oxford, England.

Cycles and spirals of nutrients

Newbold, J.D. 1992. Pages 379–408 in P. Calow and G.E. Petts (editors). The rivers handbook, volume 1: hydrological and ecological principles. Blackwell Scientific, Oxford, England.

Evaluation of utility laboratory personnel performance of a standardized AOC technique

Kaplan, L.A., M.W. LeChevallier, and T.L. Bott. 1992. Pages 1169–1185 in Proceedings of Water Quality Technology Conference, Orlando, Florida.

Assessment of [3H]thymidine incorporation into DNA as a method to determine bacterial productivity in streambed sediments

Kaplan, L.A., T.L. Bott, and J.K. Bielicki. 1992. Applied and Environmental Microbiology 58:3614–3621.

Habitat specific differences in persistence and effects of introduced cellulolytic bacteria used as surrogates for GEMS

Bott, T.L. and L.A. Kaplan. 1992. Pages 135–139 in J.E. Harvey (editor). Proceedings of the 4th Investigators meeting for EPA’s Biotechnology-Biological Control Agent Risk Assessment Research Program, Report No. EPA/600/R-92/147. U.S. EPA. Gulf Breeze, Florida.

Climate change and the life histories and biogeography of aquatic insects in eastern North America

Sweeney, B.W., J.K. Jackson, J.D. Newbold, and D.H. Funk. 1992. Pages 143–176 in Firth and S. G. Fisher (editors). Global climate change and freshwater ecosystems. Springer-Verlag, New York, New York.

A survey of assimilable organic carbon, biodegradable organic carbon, and coliform growth response in drinking waters throughout the United States

Kaplan, L.A., D.J. Reasoner, E.W. Rice, and T.L. Bott. 1992. Revue des Sciences de l’Eau 5:207–224.

Periodicity of mate attraction and flight activity of adult caddisflies (Trichoptera)

Jackson, J.K., and V.H. Resh. 1991. Journal of the North American Benthological Society 10:198–209.

Use of cellulose acetate electrophoresis to examine the population genetics of the caddisfly Helicopsyche borealis

Jackson, J.K., and V.H. Resh. 1991. Internationale Vereinigung fur Theoretische und angewandte Limnologie, Verhandlungen 24:2903–2907.

Use of 14C label to study fine particulate organic matter dynamics in flowing water

Newbold, J.D., C.E. Cushing, and G.W. Minshall. 1991. Pages 493–501 in R.A. Baker (editor). Organic substances and sediments in water, volume 2. Processes and analytical. Lewis Publishers, Chelsea, Michigan.

Potential for protozoan grazing of bacteria in streambed sediments

Bott, T.L., and L.A. Kaplan. 1990. Journal of the North American Benthological Society 9:336–345.

Cellulolytic bacteria as surrogates for genetically engineered microorganisms: microcosm studies of persistence and effects in streambed sediments

Bott, T.L., and L.A. Kaplan. 1990. Pages 139–143 in ORD Biotechnology Risk Assessment Program (editor). Review of Progress in the Biotechnology-Microbial Pest Control Agent Risk Assessment Program, Report No. EPA/600/9-90/029. U.S. Environmental Protection Agency, Washington, D.C.

Electrophoretic analysis of species boundaries and phylogenetic relationships in some taeniopterygid stoneflies (Plecoptera)

Funk, D.H., and B.W. Sweeney. 1990. Transactions of the American Entomological Society 116(3):727–751.

Concepts and methods for assessing solute dynamics in stream ecosystems

Stream Solute Workshop. 1990. Journal of the North American Benthological Society 9(2):95–119.

Nutrients for bacterial growth in drinking water: bioassay evaluation

Kaplan, L.A., and T.L. Bott. 1990. EPA Report No. EPA/600/S2-89/030. U.S. Environmental Protection Agency, Cincinnati, Ohio.

Disturbance, annual variability, and lotic benthos: examples from a California stream influenced by a Mediterranean climate

Resh, V.H., Jackson, J.K., and McElravy, E.P. 1990. Pages 309-329 in R. de Bernardi, G. Giussani, and L. Barbanti (editors). Scientific perspectives in theoretical and applied limnology. Memorie dell’Istituto Italiano di Idrobiologia 47.

Modifications to simplify an AOC bioassay for routine use by utilities monitoring bacterial regrowth potential in water distribution systems

Kaplan, L.A., and T.L. Bott. 1990. Pages 1031–1042 in Proceedings Water Quality Technology Conference, Philadelphia, Pennsylvania.

Science in pictures: the mating of tree crickets

Funk, D.H. 1989. Scientific American 261(2):50–59.

Sequential decision plans, benthic macroinvertebrates, and biological monitoring

Jackson, J.K., and V.H. Resh. 1989. Environmental Management 13:455–468.

Protein relationships among titmice (Parus)

Gill, F.B., D.H. Funk, and B. Silverin. 1989. The Wilson Bulletin 101(2):182–197.

Densities of benthic protozoa and nematodes in a piedmont stream

Bott, T.L., and L.A. Kaplan. 1989. Journal of the North American Benthological Society 8:187–196.

Distribution and abundance of adult aquatic insects in the forest adjacent to a northern California stream

Jackson, J. K., and V. H. Resh. 1989. Environmental Entomology 18:278–283.

Activities and ecological role of adult aquatic insects in the riparian zone of streams

Jackson, J.K., and V.H. Resh. 1989. Pages 342-345 in D. Abell (editor). Proceedings of the California Riparian Systems Conference: protection, management, and restoration for the 1990’s. General Technical Report PSW-110, Pacific Southwest Forest and Range Experiment Station, Forest Service, U.S. Department of Agriculture, Berkeley, California.

Measurement of assimilable organic carbon in water distribution systems by a simplified bioassay technique

Kaplan, L.A., and T.L. Bott. 1989. Pages 475–498 in Proceedings Water Quality Technology Conference, St. Louis, Missouri. 

Electrophoretic study of Eastern North American Eurylophella (Ephemeroptera: Ephemerellidae) with the discovery of morphologically cryptic species

Funk, D.H., B.W. Sweeney, and R.L. Vannote. 1988. Annals of the Entomological Society of America 81(2):174–186.

Sequential decision plans in monitoring benthic macroinvertebrates: cost savings, classification accuracy, and development of plans

Jackson, J.K., and V.H. Resh. 1988. Canadian Journal of Fisheries and Aquatic Sciences 45(2):280–286.

The use of long-term ecological data and sequential decision plans in monitoring the impact of geothermal energy development on benthic macroinvertebrates

Resh, V.H., J.K. Jackson, and E.P. McElravy. 1988. Verhandlungen der Internationale Vereinigung für Theoretische und angewandte Limnologie 23:1142–1146.

Genetic variation in stream mayfly (Insecta: Ephemeroptera) populations in eastern North America

Sweeney. B.W., D.H. Funk, and R.L. Vannote. 1987. Annals of the Entomological Society of America 80:600–612.

Geographic parthenogenesis in the stream mayfly Eurylophella funeralis in eastern North America

Sweeney, B.W. and R.L. Vannote. 1987. Holarctic Ecology 10:52–59.

Phosphorus spiralling in rivers and river-reservoir systems: implications of a model

Newbold, J.D. 1987. Pages 303–327 in J.F. Craig and J.B. Kemper (editors). Regulated streams. Springer, Boston, Massachusetts.

Techniques for demonstrating sex pheromones in Trichoptera

Resh, V.H., J.K. Jackson, and J.R. Wood. 1987. In Bournaud M., Tachet H. (editors) Proceedings of the Fifth International Symposium on Trichoptera. Series Entomologica 39:161–164. Springer, Dordrecht.

Population genetic structure of two mayflies (Ephemerella subvaria, Eurylophella verisimilis) in the Delaware River drainage basin

Sweeney, B.W., D.H. Funk, and R.L. Vannote. 1986. Journal of the North American Benthological Society 5(4):253-262.

Growth and production of a stream stonefly

Sweeney, B.W., and R.L. Vannote. 1986. Ecology 67:1396–1410.

Effects of temperature and food quality on growth and development of a mayfly, Leptophlebia intermedia

Sweeney, B.W., R.L. Vannote, and P.J. Dodds. 1986. Canadian Journal of Fisheries and Aquatic Sciences 43:12–18.

Secondary production, emergence, and export of aquatic insects of a Sonoran Desert stream

Jackson, J.K., and S.G. Fisher. 1986. Ecology 67:629–638.

Larval feeding and growth rate of the stream cranefly Tipula abdominalis in gradients of temperature and nutrition

Vannote, R.L. and B.W. Sweeney. 1985. Proceedings of the Academy of Natural Sciences of Philadelphia 137:119–128.

Acclimation of stream-bed heterotrophic microflora: metabolic responses to dissolved organic matter

Kaplan, L.A., and T.L. Bott. 1985. Freshwater Biology 15:479–492.

Phosphorus spiralling in a woodland stream: seasonal variations

Mulholland, P.J., J.D. Newbold, J.W. Elwood, L.A. Ferren, and J.R. Webster. 1985. Ecology 66:1012–1023.

Effect of a leaf shredding invertebrate on organic matter dynamics and phosphorus spiralling in heterotrophic laboratory streams

Mulholland, P.J., J.W. Elwood, J.D. Newbold, and L.A. Ferren. 1985. Oecologia 66(2):199–206.

Adenylate energy charge in streambed sediments

Kaplan, L.A., and T.L. Bott. 1985. Freshwater Biology 15:133–138.

Benthic bacterial biomass supported by streamwater dissolved organic matter

Bott, T.L., L.A. Kaplan, and F.T. Kuserk. 1984. Microbial Ecology 10:335–344.

Factors influencing life history patterns of aquatic insects

Sweeney, B.W. 1984. Pages 56–100 in V.H. Resh and D. Rosenberg (editors). Ecology of aquatic insects. Praeger Scientific Publishers, New York, New York.

In situ measures of dissolved organic carbon flux in a rural stream

Kuserk, F.T., L.A. Kaplan, and T.L. Bott. 1984. Canadian Journal of Fisheries and Aquatic Sciences 41:964–973.

Phosphorus dynamics in a woodland stream ecosystem: a study of nutrient spiralling

Newbold, J.D., J.W. Elwood, R.V. O’Neill, and A.L. Sheldon. 1983. Ecology 64:1249–1265.

Microbial heterotrophic utilization of dissolved organic matter in a piedmont stream

Kaplan, L.A., and T.L. Bott. 1983. Freshwater Biology 13:363–377.

Resource spiralling: an operational paradigm for analyzing lotic ecosystems

Elwood, J.W., J.D. Newbold, R.V. O’Neill, and W. Van Winkle. 1983. Pages 3–27 in T.D. Fontaine III, and S.M. Bartell (editors). Dynamics of lotic ecosystems. Ann Arbor Science, Ann Arbor, Michigan.

The effect of grazing intensity on phosphorus spiralling in autotrophic streams

Mulholland, P.J., J.D. Newbold, J.W. Elwood, and C.L. Hom. 1983. Oecologia 58:358–366.

Continuous ammonium enrichment of a woodland stream: uptake kinetics, leaf decomposition, and nitrification

Newbold, J.D., J.W. Elwood, M.S. Schultz, R.W. Stark, and J.C. Barmeier. 1983. Freshwater Biology 13(2):193–204.

Diel fluctuations of DOC generated by algae in a piedmont stream

Kaplan, L.A., and T.L. Bott. 1982. Limnology and Oceanography 27:1091–1100.

Nutrient spiralling in streams: implications for nutrient limitation and invertebrate activity

Newbold, J.D., R.V. O’Neill, J.W. Elwood, and W. Van Winkle. 1982. American Naturalist 120(5):628–652.

Population synchrony in mayflies: a predator satiation hypothesis

Sweeney, B.W. and R.L. Vannote. 1982. Evolution 36:810–821.

Organic carbon spiralling in stream ecosystems

Newbold, J.D., P.J. Mulholland, J.W. Elwood, and R.V. O’Neill. 1982. Oikos 38(3):266–272.

Measuring nutrient spiralling in streams

Newbold, J.D., J.W. Elwood, and R.V. O’Neill. 1981. Canadian Journal of Fisheries and Aquatic Sciences 38(7):860–863.

The limiting role of phosphorus in a woodland stream ecosystem: effects of P enrichment on leaf decomposition and primary producers

Elwood, J.W., J.D. Newbold, A.F. Trimble, and R.W. Stark. 1981. Ecology 62(1):146–158.

Patterns of dissolved organic carbon in transport

Kaplan, L.A., R.A. Larson, and T.L. Bott. 1980. Limnology and Oceanography 25:1034–1043.

Life history, developmental processes, and energetics of the burrowing mayfly Dolania americana

Harvey R.S., Vannote R.L., Sweeney B.W. 1980. Pages 211–230 in J.F. Flannagan and K.E. Marshall (editors). Advances in Ephemeroptera biology. Springer, Boston, Massachusetts.

Effects of logging on macroinvertebrates in streams with and without buffer strips

Newbold, J.D., D.C. Erman, and K.B. Roby. 1980. Canadian Journal of Fisheries and Aquatic Sciences 37(7):1076–1085.

Nutrient transport in surface runoff from a subalpine watershed, Lake Tahoe basin, California

Leonard, R.L., L.A. Kaplan, J.F. Elder, R.N. Coates, and C.R. Goldman. 1979. Ecological Monographs 49:281–310.

Biology, ecophysiology, and energetics of Sigara alternata (Say) in White Clay Creek

Schnack, J.A., B.W. Sweeney, and R.L. Vannote. 1978. Physis Sección B 37(93):89–98.

Bioenergetic and developmental response of a mayfly to thermal variation

Sweeney, B.W. 1978. Limnology and Oceanography 23(3):461–477.

Effectiveness of an artificial substrate for sampling macroinvertebrates in small streams

Roby, K.B., J.D. Newbold, and D.C. Erman. 1978. Freshwater Biology 8(1):1–8.

Epilithic periphyton and detritus studies in a subalpine stream

Perkins, M.A., and L.A. Kaplan. 1978. Hydrobiologia 57:103–109.

Evaluation of streamside bufferstrips for protecting aquatic organisms

Erman, D.C., J.D. Newbold, and K.B. Roby. 1977. Contribution No. 165, September 1977. California Water Resources Center, University of California, Davis.

Biological assessment of timber management activity impacts and buffer strip effectiveness on National Forest Streams of northern California

Roby, K.B., D.C. Erman, and J.D. Newbold. 1977. Earth Resources Monograph No. 1, USDA Forest Service, California Region.

The productivity, mixing modes, and management of the world’s lakes

Horne, A.J., J.D. Newbold, and M.M. Tilzer. 1975. Limnology and Oceanography 20(4):663–666.

Oxygen depletion model for Cayuga Lake

Newbold, J.D., and J.A. Liggett. 1974. Journal of the Environmental Engineering Division 100(1):41–59.